AMCG00017150


Basic Information

Item Value
gene id AMCG00017150
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48225164 ~ 48232148 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017150
GTAGATGTCCGCaattctgcgcagaagaACGTAACTTCAGTTCTGACGCTACCTCTGACGACACGAAGACCGACCTGCGCAGTGTACACTTGGAAGCAAGATGGCGGCCGCCAGTGAGACAAATGTACAGGTTGCACACgtggggaagaaaaagaaagttGCTCCGAAACGATACTGGGAACACAGTCAGAAAGACTCAAAGGAAGACATTCAAACAGAGGGGGTGAAACCAAAACGTCTTGGACATGCACAAGGGACCAGAGCACAGCAGAGACCGAGGCCGGTCAAGACGAAAAGGAAGAATGATATTGGGAAGTTTGTGTCTGGGAAAAAGGACCCATTTCCAGGCAAAGCTCCAATTCCCAAAGAAAAGTTGAAGCAGTTTAAGCGTGGAGAGAAGAATGAGCTGTCTTCTGTGACACACAGGGGTCTGAAAGATTCCCTGACGCTCTCAGAAGCAGCATCTGATCTGGCACAGAGCCAAGCTGCGCGATATAACCTGTTGCTTCCAGAGGATGCTGGGTTTTTGGAAGGAGATGAGGATGAGGACACATGCACAATTGAACAGGGAGATATTTCTGAAGCTGTCGATATCACTTCCGGGGCAAAGTACTTCAACTTGGTGCTGTCCCAATTTGGTCCGTACAGACTAGACTACACAAGGACTGGCAGGCATTTGCTCCTCGGGGGGCGCCGAGGCCATGTGGCCTGCATGGACTGGCATTCGAAGCAGCTTCTTTGTGAGATGAACGTCATGGAAACGATCAATGATGTGAAGTGGCTCCACAGTGAGGCGATGTTCGCAGTGGCGCAGAAGAAGTGGCTGCATATCTACGACTCTCTGGGGGTGGAGCTTCACTGTGTCAAGAAATTCAACGACGTGCTACGACTCCAATTCCTGCCGTACCACTTCCTGCTTGCCACCTCAAGTGCCACGGGGTTCCTGCAGTATCTAGATGTGTCTGTGGGGAAGGAAGTTGCAGCCATTTGCACTAAACTGGGCCGACTAGATGTGATGTCACAGAACCCACAAAATGCAGTCATTCATCTGGGACATCCAACAGGTACAGTGACGTTCTGGTCACCCAATCAGAAGGAGCCGCTTGTTAAGATGTTGTGTCACCGAGGAGGCGTGAGGTCTATAGCCATCGACAAAACTGGCACTTACATGGTGACCTCAGGGCTGGACAGGAAGCTGAAAGTGTTTGACATTAGAGCACTCCGCCCCCTGCAATCCTACTCTCTGCCAGCAGGGGCAACCTGCCTTTCGATGAGTCAGAGGGGATTACTCTCGGCTTGTGCTGGAGATACTGTTCAGGTGTACCAGGATGTGATCGGCACTACTGTTCGGAAGCCCTACATGGCCCACAAAGTGCGGGGCTCGGTATGGGGGGCCCAGTTCTGCCCTTTCGAGGATGTACTGGGAATCGGACACGGTGACGGGTTCACCAGTATGATTGTCCCAGGTGCTGGAGAGCCCAATTTCGATGGCCTGGACTCAAATCCCTTCCGCAGTGTGAAACAGAGGCAGGAATGGGAGGTCAAGGCTTTACTGGAAAAGATCCAGCCAGAACTGATAGGCCTGGAGCCAGCCAAACTGGGAGAAGTGGATAAGGCCACCTGGGACATGCGGCACCAGGAGAGAGTGGAGAGACTGGGATTTGATCCGCTGGCTAAAGAGAAGTTTAAGCCAAGGATGAAAACTAAAGGCCGGAGTTCAAGCGCCAACGTTGAGAAGCGCAAGAAGAAAGTTGCCCACGAGGACCAGCGGGAGCTGATCAGACAGACTGTGGAAGCCAGAATGgagcaacaaaaagaaaagaaagtgacTGCCATTGGTCAGAGATCAGCACTGGACAGGTTCAAGAAATAGGAGGCATTTTTTGCTCTCGTGTTACAACTGAGTGTTTGtatatatcaatacaaaattagtTGTCCCCCTCTTTCTAATGATGAATACCTTGCATATTGTCTTTTTgatattgtaatattaaaaaaaaaaaaagttttattttgc

Function

GO: NA

KEGG:

id description
K14768 UTP7, WDR46; U3 small nucleolar RNA-associated protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017150 True 2017 mRNA 0.50 16 48225164 48232148

Neighbor

gene id symbol gene type direction distance location
AMCG00017153 NA coding downstream 7705 48216639 ~ 48217459 (-)
AMCG00017149 LOC104952051 coding downstream 12678 48175212 ~ 48212486 (-)
AMCG00017145 NA coding downstream 55489 48160403 ~ 48169675 (-)
AMCG00017146 NA coding downstream 66767 48148754 ~ 48158397 (-)
AMCG00017141 LOC105912243 coding downstream 258573 47965527 ~ 47966591 (-)
AMCG00017152 NA coding upstream 7936 48240084 ~ 48241492 (-)
AMCG00017148 NA coding upstream 17206 48249354 ~ 48261026 (-)
AMCG00017151 NA coding upstream 91667 48323815 ~ 48345751 (-)
AMCG00017159 ptprg,LOC107592848 coding upstream 271770 48503918 ~ 48559435 (-)
AMCG00017160 LOC107752167 coding upstream 352328 48584476 ~ 48587639 (-)
G18702 NA non-coding downstream 846 48224050 ~ 48224318 (-)
G18690 NA non-coding downstream 54054 48170158 ~ 48171110 (-)
G18652 NA non-coding downstream 160125 48062312 ~ 48065039 (-)
G18651 NA non-coding downstream 170542 48054208 ~ 48054622 (-)
G18559 NA non-coding downstream 597643 47627263 ~ 47627521 (-)
G18709 NA non-coding upstream 542 48232690 ~ 48237413 (-)
G18827 NA non-coding upstream 1128520 49360668 ~ 49360937 (-)
G18828 nek4,LOC106565859 non-coding upstream 1129512 49361660 ~ 49361926 (-)
G18829 NA non-coding upstream 1131601 49363749 ~ 49364302 (-)
G18830 NA non-coding upstream 1133058 49365206 ~ 49366441 (-)
AMCG00017105 srgap3 other downstream 3064027 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 3568259 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 4565562 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 4916538 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 4938561 43280237 ~ 43286603 (-)
AMCG00017158 NA other upstream 256979 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 1255049 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 2952083 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 3198539 51430687 ~ 51435239 (-)
G19335 NA other upstream 3213439 51445587 ~ 51449786 (-)

Expression


Co-expression Network