AMCG00017154


Basic Information

Item Value
gene id AMCG00017154
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48352396 ~ 48352746 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017154
ATGTTGGATCCATCATCTAGCGAAGAGGAATCGGATGAGATCGTGGAAGAAGAAAGCAAAGAGGTGATGGCACCCCAGGCCGGAGCTCGGCTTTCCCCGAGCCGGACCAGCGAGAGCTCCGGCGGGCTGCAGCCCAGCAGCCGGAGCAGCAGCGTCCGCCCGTCCAGCCCCAGTCCCTCGGTGGTGAGcgagaaagagaaggaggagatggagaagatgcagaaggaggaagaggaacgAAAGAGGAAGCTGCAGCTGTATGTCTTTGTGATGAGGTGCATTGCTTACCCTTTCAACGCGAAGCAGCCTACAGACATGGCGAGGCGACAGCAGAAGGTAAGCGGAGTATAA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017154 True 351 mRNA 0.58 1 48352396 48352746

Neighbor

gene id symbol gene type direction distance location
AMCG00017147 thoc7 coding upstream 136233 48212653 ~ 48216163 (+)
AMCG00017144 psmd6 coding upstream 179043 48170296 ~ 48173353 (+)
AMCG00017143 NA coding upstream 208918 48133618 ~ 48143478 (+)
AMCG00017142 NA coding upstream 290169 48012012 ~ 48062227 (+)
AMCG00017140 magi1,magi1b,LOC107728617,LOC107553826 coding upstream 401612 47903682 ~ 47950784 (+)
AMCG00017156 cadps,LOC106582941,LOC106565849 coding downstream 8602 48361348 ~ 48447697 (+)
AMCG00017155 LOC108271493 coding downstream 102749 48455495 ~ 48460635 (+)
AMCG00017157 NA coding downstream 122622 48475368 ~ 48476484 (+)
AMCG00017161 NA coding downstream 432422 48785168 ~ 49023630 (+)
AMCG00017165 NA coding downstream 788853 49141599 ~ 49204142 (+)
G18722 NA non-coding upstream 25591 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 287378 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 497738 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 873140 47478978 ~ 47479256 (+)
G18470 NA non-coding upstream 1313873 47028787 ~ 47038523 (+)
G18791 NA non-coding downstream 854062 49206808 ~ 49211256 (+)
G18865 NA non-coding downstream 1083518 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 1229518 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 1320339 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 1801612 50154358 ~ 50154694 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 3390795 44949034 ~ 44961601 (+)
G18192 NA other upstream 3696298 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 4214465 44126214 ~ 44137931 (+)
G17697 NA other upstream 5954609 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 9097906 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 1019276 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 1049785 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 1360721 49713467 ~ 49727567 (+)
G19113 NA other downstream 2199134 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 2206704 50559450 ~ 50563278 (+)

Expression


Co-expression Network