AMCG00017158


Basic Information

Item Value
gene id AMCG00017158
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48489127 ~ 48494407 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017158
ATGGCGTCGTGTGGGGCATTTCATTGGTCAGCTGGAGACGCTGACGTCCTTCCTGTCCCCATGACTACAGAGGGAACCAGTCCTGCACGGCTGATGGAAAACCAGTACAAGGAccagaagaataagaagaaggATTACACCGTTTTGGCAGATGGAGCCcaaaagagaaatgcaaagcTTATCGAG
>TU23267
CCATGACTACAGAGGGAACCAGTCCTGCACGGCTGtgaaAACCTGCCGCTTAGTAGGAAGAACACGTGGGATATGACGGCTTTCTTGGCTCAAGAAATTGAGTTAAGCAGGCGACATGAAGATATGTAGGAGGGCAGCTTTGCTTCAGCAGATGGAAAACCAGTACAAGGAccagaagaataagaagaaggATTACACCGTTTTGGCAGATGGAGCCcaaaagagaaatgcaaagcTTATCGAGGATATGCAAACAATGACAGATCGACTAAAAGCAAGACCTCTTCTGCACCCTGATGTTGTAAACCTGGAGACACGGTACTGGGCATCGGTTGAAGAGAAGATACCGGAATGGGAACAGTTTCTGTTGGGAAAGATTCAGCCGCCTGTGGATGCTAGGAAACAAGTGAGACAGAAAGGTACATCTAAGGACAACCAGCAATCAAATCGAATTGGTTTACCTCCGCGATCAGGTTCTATGTCTGTATCCTGACCATCTGCAGTCTCTGAAATGGccaaaaaataatcataataaataaatgataatgttatgtaaatgtgtgCACAGATTATgtaaatttcatatttttagttttttgtgacTATCTGTTTTTAAGTGTTAGACCCTAGTGTTCCACAGACATTGCAAGGATAGTTCATAAAGTTTACCTTCACTAATATATCTTAGAGATTAAACACTGTTTTACTAAATGGATAACAAACTTACCTTATGGAAGAGGTCGTTAGAACTGGATAGGGCTTGTTGGTCTCTGTTCAGTGTATGAGAAATGGGCCATCTTTGTCTTTGCATGTTGGAAAGCACGGTTTAAAGTTCATGTTTAGCAAATCAATCGTAAATCGCCCGGCTTTGCTCTTCACTCACGTTTGTTCATACATCTTTATGTTAATGGCTTTGCTCACTTTTGGACTGTCTATTTGAACTTGAGATAAGTGGTTCCTTGCAGCGGCtggaaaattagaaaatgtctgAGTCCCAACCGGTCGGTCCTAGTCGAATGGGGGGATGTGAACATCTGACGGACGTGCTAAGACCTGTAATAGGTTTTCTATTCCCTCTGAACATCCGTGTTCTACTGCAGCTAAGCctttcaaatggaaatgcaaCAGGACGTCAACCAGAAGAAGATAAACTGCTCCTATCTTGTTATGTATATCAAGGTGATGGGACAGATCTACAAGTTTGTACAGAAATCCCAAAGATAATTCTTTTTAAGCAGTCATAGGATAATATTTATAACACTTACTGATGTGCtaagttaatatttttttgtttttaatgaggggaaaaaaacgcATGTGGGAAAGTCTGACATAAATGTTTCAGATGgagattaaatatttgtttctttattttgtaactttGCATCTGTTTTCTATATTATAAAAAGGGTTAATGTCTGACTCTATAGTCTGATTTAAATAACAAGATCATGGGTTTTGGAGACTAAAAATTGCACACaactatacaaaatatgtaattgaaacGATCATCCTctgtaatgaaacaaaatgtggaaCTGTTATATAAAGGATGAATGAAGCTGATTTGtacctatacacacacagcttttgCTCATAGAGAAACAATATTCgccaaattcatattttttactgATTTTAGTTTAGcctctgtgtttctgtaaaatgGACTAAAACACTGAACAGACACCTAACAGTTAAAAGAGACCgagaaacaaactaaatatagAAGATTTGTGCCTCCCAgtctttttacacatttagttTATCCCTCTGTCACATATCTTCTTTGTCTGTCTTCATGTACACTAGAAATGTAATTCCCCACAATTtgaattacaattttacatGCTGGgatatttttcttcccccattTGGCTCTGTAAAGCCTTTTCCTgccatatttcagtttattacCACAATAATAATCTGTAATGTACTCACAGTGATTTTGGCATTATTATGCCAGACTATAAATACCATTTGTGAGAGAATTACCCATTTTGCTGTCCTAGTTTCTGCTGCCGTATGAGTGT

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0008033 tRNA processing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017158 False 186 mRNA 0.51 2 48492967 48494407
TU23267 True 2036 TUCP 0.38 5 48489127 48494349

Neighbor

gene id symbol gene type direction distance location
AMCG00017151 NA coding downstream 143376 48323815 ~ 48345751 (-)
AMCG00017148 NA coding downstream 228101 48249354 ~ 48261026 (-)
AMCG00017152 NA coding downstream 247635 48240084 ~ 48241492 (-)
AMCG00017150 NA coding downstream 256979 48225164 ~ 48232148 (-)
AMCG00017153 NA coding downstream 271668 48216639 ~ 48217459 (-)
AMCG00017159 ptprg,LOC107592848 coding upstream 9511 48503918 ~ 48559435 (-)
AMCG00017160 LOC107752167 coding upstream 90069 48584476 ~ 48587639 (-)
AMCG00017168 LOC105028385,LOC106583015,LOC100136667 coding upstream 807555 49301962 ~ 49318919 (-)
AMCG00017170 NA coding upstream 875169 49369576 ~ 49370958 (-)
AMCG00017169 NA coding upstream 882116 49376523 ~ 49383368 (-)
G18709 NA non-coding downstream 251714 48232690 ~ 48237413 (-)
G18702 NA non-coding downstream 264809 48224050 ~ 48224318 (-)
G18690 NA non-coding downstream 318017 48170158 ~ 48171110 (-)
G18652 NA non-coding downstream 424088 48062312 ~ 48065039 (-)
G18651 NA non-coding downstream 434505 48054208 ~ 48054622 (-)
G18827 NA non-coding upstream 866261 49360668 ~ 49360937 (-)
G18828 nek4,LOC106565859 non-coding upstream 867253 49361660 ~ 49361926 (-)
G18829 NA non-coding upstream 869342 49363749 ~ 49364302 (-)
G18830 NA non-coding upstream 870799 49365206 ~ 49366441 (-)
G18831 NA non-coding upstream 873074 49367481 ~ 49368062 (-)
AMCG00017105 srgap3 other downstream 3327990 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 3832222 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 4829525 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 5180501 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 5202524 43280237 ~ 43286603 (-)
AMCG00017178 NA other upstream 992790 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 2689824 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 2936280 51430687 ~ 51435239 (-)
G19335 NA other upstream 2951180 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 3352189 51846596 ~ 51860267 (-)

Expression


Co-expression Network