Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017160 |
| gene name | LOC107752167 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 48584476 ~ 48587639 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| PREDICTED: receptor-type tyrosine-protein phosphatase gamma-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017160 | True | 324 | mRNA | 0.46 | 2 | 48584476 | 48587639 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017159 | ptprg,LOC107592848 | coding | downstream | 25041 | 48503918 ~ 48559435 (-) |
| AMCG00017151 | NA | coding | downstream | 238725 | 48323815 ~ 48345751 (-) |
| AMCG00017148 | NA | coding | downstream | 323450 | 48249354 ~ 48261026 (-) |
| AMCG00017152 | NA | coding | downstream | 342984 | 48240084 ~ 48241492 (-) |
| AMCG00017150 | NA | coding | downstream | 352328 | 48225164 ~ 48232148 (-) |
| AMCG00017168 | LOC105028385,LOC106583015,LOC100136667 | coding | upstream | 714323 | 49301962 ~ 49318919 (-) |
| AMCG00017170 | NA | coding | upstream | 781937 | 49369576 ~ 49370958 (-) |
| AMCG00017169 | NA | coding | upstream | 788884 | 49376523 ~ 49383368 (-) |
| AMCG00017175 | NA | coding | upstream | 816483 | 49404122 ~ 49447336 (-) |
| AMCG00017174 | nisch | coding | upstream | 867855 | 49455494 ~ 49477304 (-) |
| G18709 | NA | non-coding | downstream | 347063 | 48232690 ~ 48237413 (-) |
| G18702 | NA | non-coding | downstream | 360158 | 48224050 ~ 48224318 (-) |
| G18690 | NA | non-coding | downstream | 413366 | 48170158 ~ 48171110 (-) |
| G18652 | NA | non-coding | downstream | 519437 | 48062312 ~ 48065039 (-) |
| G18651 | NA | non-coding | downstream | 529854 | 48054208 ~ 48054622 (-) |
| G18827 | NA | non-coding | upstream | 773029 | 49360668 ~ 49360937 (-) |
| G18828 | nek4,LOC106565859 | non-coding | upstream | 774021 | 49361660 ~ 49361926 (-) |
| G18829 | NA | non-coding | upstream | 776110 | 49363749 ~ 49364302 (-) |
| G18830 | NA | non-coding | upstream | 777567 | 49365206 ~ 49366441 (-) |
| G18831 | NA | non-coding | upstream | 779842 | 49367481 ~ 49368062 (-) |
| AMCG00017158 | NA | other | downstream | 90069 | 48489127 ~ 48494407 (-) |
| AMCG00017105 | srgap3 | other | downstream | 3423339 | 45118290 ~ 45161137 (-) |
| AMCG00017091 | brk1,BRK1,LOC106565571 | other | downstream | 3927571 | 44653455 ~ 44656905 (-) |
| AMCG00017067 | sumf1 | other | downstream | 4924874 | 43633770 ~ 43659602 (-) |
| AMCG00017060 | NA | other | downstream | 5275850 | 43305697 ~ 43308626 (-) |
| AMCG00017178 | NA | other | upstream | 899558 | 49487197 ~ 49494144 (-) |
| AMCG00017232 | NA | other | upstream | 2596592 | 51184231 ~ 51212373 (-) |
| AMCG00017234 | LOC100690894,LOC102799047,LOC102206238 | other | upstream | 2843048 | 51430687 ~ 51435239 (-) |
| G19335 | NA | other | upstream | 2857948 | 51445587 ~ 51449786 (-) |
| AMCG00017251 | actr8 | other | upstream | 3258957 | 51846596 ~ 51860267 (-) |
