AMCG00017163


Basic Information

Item Value
gene id AMCG00017163
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49211857 ~ 49221883 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017163
CTTCCTTACAAGATGCACTTCCTGCATCCTCCTTGGCAGTTGTAACATACATATCCTGGCTGGAGAGGTCATGGTGAACTGATATGCCATTAAACTACATAAGTTGCCACGCACACCTGAGTGAAGTATCGGCACCTATTTCATCagTGAAATCCTTCCTGACTTGTATGTAGCTGAAATGAGGTCTAGAGAAGCAGTTCGATTTGGTTTCATCCTTGCTGCACTTTTTCTGATGTGGCTCATTGCAAGTATGCCACTGCAGTATAAGGTGAAAGTGGAGAATATCAGGGATCTTTTAGACCGTTTTAATCCAACAAAAGCACCTGAACCTGTGATCGTTGCAGTAACTCATAAGTGTGGGCTGTCTAAGGAATGTCCTGAAGAtcactttgcttttaaaattcGAAGTGGAGCGGCCAATGTGGTAGGACCAAAGATCTGCTTTGATGGCAAAAAAAAACGGAAAGTGCGTCTTACTCATAACTGCATCGCTGCAAAAAGTCAGACTGGGGAGATCATCAAGACAGAGGTTTTTAACATGTACTCTGGAGatgtcCAACCATTACTGAATTTCTTGAAAGATATAAAGTCTGGACAGCTCATATTAGTTGCTTCATTTGATGAAATAGCAACAAAGATGACGGATGAAGTCAGAGAATTTTTCACCAGTTTTGGCAGCAGTCTGATAAAGTCGGTGAAATACCGAGATAACTGGGTTTTTGTTGGAGCTGCAGGATTTAAGGAGAAAAGCCCATttgaaatgtacattaaaaatgacaaagataaaaatatatatgacgGCTGGCCTGAATTACTGGAGATGGATGGCTGTATTCCCATGAAGACCTAACCAAAGTGCAGACCGACGCCTTTTCTgtcttgtttcattgttttgctCAGAAACCAGATTTTGTctcttttgttaaaaaaacatgcaataattgtatttattttttttatttaggaaaTGAACTTACCACAGATGTAACtaattatacaatgttttattattaatgcgTTCTAAACAGAATCCTATATTAGATTAGGTTAACTTTTGTATTCCTGGAAATCAAGCCAGCATTATAACATGCTGTACTGTCGTCAAGTCTTAAATAATGCTAAACTAAGTAATAAGAAATGAATTTTCAAGTCCTGCCAGTCAGTCTTTACAAGATGTCATTTacatgctgtatatatattttttctttaactatCAGAGCAAAAGCCtgcttcagtttaattttgcattcaaATATAAAGATTTTACCCCTAAACTTCAATTCATTTGAACAATATAAGAATATTGTTaacatatttattacacacaacATATGTATAACATGTAACATAcactaaaataaagtttaatttattataacagAATTTTAAAACCAGAACTATTgtgtattgctttgtattaGAAATTAAGTAGATCAGCATCTCATGTTCTATtggaagtgtttatttaaataatacaagtatgagatttgttattatatattgtttgtactttttaattctCCTCTCTATTACCTACTTTTTCATCAAGGACAGTTTCATTGTTTGTGTGATAAGCagcatgttttcttttgcatttttctaaaatgtttgataAGGACTTACACTTTTCAACCTGTTTTAGAGGGACATGATTATTTTCTCTATATCATTTTTGGTGTGgggtattttcattttcatttgtaatatcATAGTCTGTACCCtagatttaacattttgtcAGTGAttttgttgtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtattttcaGGAATAACACTAGAGGTCACTGTTAACCTTATATGGGAACATTACAACCTAGAGAGAACTGACCTTAATTCAACTGAGGTTTAATTCAGTCTGGGAGCCTAAGGGTAGGTTGCAGGAGAAACATGTTGTTCACAACTTGATTGGTCTGCGTAACCCAATGGTTTGTGATTGGTTGGGGATACATAAAGTAACTGGCTACTAAACATTAGCATAGTTTGTCCAGTCAAAAAGGAAGacaggaagaataaaaacatatttagggATAAACACATTAGAATTTCAGcccaaaacattgtttttacaatatgtttGGTGTTAAAGCATGGAAGAAGGAAAGTCTTATTTGGtatcaaacaaacaatttcTGATTGGAATAATTCACACATTTATAAGCATTCTAATACACAATTATCACTTGCAACATATAGTcccattttatttcagattttcaagAAACAATGTCAAACGTTACAGCATGGAAGACTAACAGCaacttgtttaaatgtaaataaatctaaCTGACAGTTTACCTGCAGTACAAGTCCTTCTGTGAGACCTGTGACAGGGTTGGCGATTGTGAAGTCACTCATTACCCACtgagaagcaaacaaaacacaaacactttagATGCTCTGTCTGGGATTGTTATATTTGTTCTTGTATGTTTAGCTTAACCCTGGAATTGattgtcaaaaaaataaaaaataaaagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017163 True 2518 mRNA 0.34 10 49211857 49221883

Neighbor

gene id symbol gene type direction distance location
AMCG00017165 NA coding upstream 7715 49141599 ~ 49204142 (+)
AMCG00017161 NA coding upstream 188227 48785168 ~ 49023630 (+)
AMCG00017157 NA coding upstream 735373 48475368 ~ 48476484 (+)
AMCG00017155 LOC108271493 coding upstream 751222 48455495 ~ 48460635 (+)
AMCG00017156 cadps,LOC106582941,LOC106565849 coding upstream 764160 48361348 ~ 48447697 (+)
AMCG00017164 NA coding downstream 16019 49237902 ~ 49252687 (+)
AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding downstream 43578 49265461 ~ 49278686 (+)
AMCG00017166 NA coding downstream 138944 49360827 ~ 49368839 (+)
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding downstream 162728 49384611 ~ 49397912 (+)
AMCG00017172 NA coding downstream 182344 49404227 ~ 49415962 (+)
G18791 NA non-coding upstream 601 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 885052 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 1146839 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 1357199 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 1732601 47478978 ~ 47479256 (+)
G18865 NA non-coding downstream 214381 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 360381 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 451202 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 932475 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 933570 50155453 ~ 50155825 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4250256 44949034 ~ 44961601 (+)
G18192 NA other upstream 4555759 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5073926 44126214 ~ 44137931 (+)
G17697 NA other upstream 6814070 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 9957367 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 150139 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 180648 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 491584 49713467 ~ 49727567 (+)
G19113 NA other downstream 1329997 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 1337567 50559450 ~ 50563278 (+)

Expression


Co-expression Network