AMCG00017164


Basic Information

Item Value
gene id AMCG00017164
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49237902 ~ 49252687 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017164
AACAGAAAGAATACTCCCTAGAGCAGCCATGtatggaaaatggaaaacacatgAATGGCTCTGCCACCATGTATTCAGACCTGCCGAGGGATCAACATGCGATCGGCAGTCTCATGGCTCAACCGGATTATATGGAAGAGGGTGATGATCTTATCAAACCCAAAAAGCTACATAATCCAGTGAAAGCTTCTAAAAGCCATCAGGAACTCCACAGGGAGCTGCTGATGAATCATAAAAGGGGTCTCGGGACAGAGACCAAACCAGAGCTTCAGCGAGTTCTCGAGCATAGGAAGCGAGAGCAGCAGATTCGACAGAAAAaggtggaggaggaggccaGAAGACTGAAGTCTCCCTTTGAGCAAGAACTTCTCAAAAGGCAACAGAGATTAGAAGAGTTGGAAAAAGAACAAGAGGCACTGAAAGACGGGACAGAAAATGCACCAGAATTCATCAAGGTCAAAGAAAATTTGAGAAGGACATCCATTTTAGACGCAGGAGAGAAGGAAGTGTAAGACAATGGGATGCACTCTCCCGGTGTGGGACTTAGTTAAGGGTATTTCACATACATCTACATGTATGTGGCCACAGAACTTCTACAGAGAGTTAACAATCTCAACTAAGATCATGTAACTCACAGACGACGGCACTCCCTCTAACTGAAACGAATGTCCAGTCTTAAATAACAGAATGATTCTCATTCAGGAAACTCACTCAACTGGAGAGAGATTCAGCTCTAGGCTTGCTTCTGACACTCTTAAAGTACATCAGCAGTCGACTTTAACCTCATAAACCAGTTATCTTTTTAAACCTTCACTACATGACATCGAAAGTTCCCAGTCTTGTCAGGATTTTAATGTGTAACATCAGGTCAACTTCTAAGAAGTGGTAATCAACAATTAAATCTGAACCAATTCTGGGATAAACATGTATGGTTTGGAAAAAAAGTGAGTCTCACAAACTAACTACCACCAGGTTTTAATCTACATACTGAAATGTATGAACAATAATGGACATGAAACTGCATTCTGTATGCTTTTGCAAGAAGCTAGCCTACTGTAATCTAGAGTGAGACAAGTATGAACGAAATCATTGAACTGTTGTGGGGAAATTTAGGGAAAACAACATTTAACTTATCTTTCTGTGAAAGgtgaattattttataatccTCCAGTAATCACGAGACATTTATTGTGTCACTATTTGACCTAAAACTGCATAAACTTTTGCAGAAACTATGTACTATCACCTATTGACTGCTATTATCCCTAATAGAATTGTGAAAACCATAAGCTATTTATTTCTGCAAGAGACTCATTGGTGCCAGTACAAAACAGTATGTTTGAGCAATACTACACTTAAGtattatactaataatatactttaaatcaataacaattttaaaagtgaagCAGCTGCCCAAGTATCTGAAGGCACAGGAATATTATATTCTtatagcaataaaataaatatatgataagATAGATTAGATTTATTTCACACAGTACCTATAAATGTTAAGAGTAAATTTGCACATGCTAGTTAGTACAATAtgaacatgtaaatatatatcaacAAATGTTGTCAAATGTCTAAGAACTTTATTAAATTTTAGGAAAACTACCATTCATCTTACAGAACATTTCAAACGACCTATATTTTTACAGACCgtcatgtttaattttattttcactgtcccccagaaaaaaataaaaccagtacaGCTGGCCGCtatgtgtgttttaaactgttatGTCAATAATAACCAAAAGGGAATATCAATGTATTGAAAAAGTAAAGTGACCTTCagttagtaaaataaaatcaagtgtCATGTACAAATATCCTGCTGGTCCACTGTGATTATTACAGGTATCTTAATCTATACATTTCATTCcatatttttaaaggagaatCACAGTAACTTTATACCTCTTTGGGACAGCTAATAACAAAGATAATAACAATAGGGTGTTCTTCTCACAGTGACAAAGCAGCTCCCATTGTCATTACATTCTCTTCATAAAGGCcaaatataaaagtatttacATTGGGATTCAACTAGAAGTGTGACTTTGCCATGACATGGAAACAGCAGCCAGATCCAATCTTTAATATGAATAACACTATTGTTGCTATatataaaccataaataaaataactatcaACTTCTCTGCCCTGTTCAAAATGTGATCCTTCACTCCAAGAGAACTGGAGATTCTGCTGTAAagtattttgattatatttatctttaaaattacaagatttgcttttataataacactaataatgtatttacagtatccTTAAAAGAGCTGAGTGAATGAATTCAATGAGAAACCTTTTGGATGTATGGCTAGGGTTTACTTAGTGCCTTTCACATTATAGTATACCAGTTAATGACATGGAAACAAGGTTATATTGTGAtcaacattcaaatcaaaatatgtattaactaCAGTAGACTAAGGGACTATGGATTGGTGTCACTGTTTGTGTAATTTAGATAAAATGTTCTCAAAAGGACATtcatagtttgttttatttcaaagaaTTGTTCAGTGGTGAAAGTCTTAATGcggtttgtgtgtatataagtgTGCATGTAAGCGTTCAGTTTGTCTGTTAGattgtttacagttttttttttctttaatcttaCAATGTTACCTTAACAGattcaatatattaatgtactgtatctgAAGTGTTACATAGTATGTTGCTTCTTTTGCATATATTGCTAATTAAGCAATTTTTTTGATACACTACATTTACACCAATCTCTTTCCAAAACAGAGAGATGTAAAATCTGCAATacaatcaaaagaaaatcatCCATCTAGATgacaatgtattaatgtgtcagggacaagacaaaacaaaatatactaaGCATTTTAGAATGTAGATTTTCACTGAAAGATTAAAGATTCAAATACTAAAAAGCAGGTATTAAATATCAccaaaccatttattttcattatttacaccTTTGCAATGTACAATGATTtggtcattatttttatttattttactgtattctgCATTTCTATTAGTTGTCTTTGTGTTGCGTCTCAAATAAGCTTTGCCTTTATTGAATCCTTAATGAGAAACAAAGAAGCCATTTAACATCATTTTCAATATTagctgtgtgcatgtgtatgcaCCCATTTAATCTGTTAATACATATTTCCACTTTTCTTAATTCTTTAAGAGTTTTTTTGTTATCAAAAATATAACAtgcaacaatgttttttttattattattttgacaggACACTAAGATTGTTGGGAACAATTTagacaaatatatatgcagGTATTTAAAAACTGATGTATGCAATAAAATACTTGTGTATTTCTTTGTAACAAATAAAGAACTAAAACTGATTGACAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017164 True 3399 mRNA 0.33 4 49237902 49252687

Neighbor

gene id symbol gene type direction distance location
AMCG00017163 NA coding upstream 16019 49211857 ~ 49221883 (+)
AMCG00017165 NA coding upstream 33760 49141599 ~ 49204142 (+)
AMCG00017161 NA coding upstream 214272 48785168 ~ 49023630 (+)
AMCG00017157 NA coding upstream 761418 48475368 ~ 48476484 (+)
AMCG00017155 LOC108271493 coding upstream 777267 48455495 ~ 48460635 (+)
AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding downstream 12774 49265461 ~ 49278686 (+)
AMCG00017166 NA coding downstream 108140 49360827 ~ 49368839 (+)
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding downstream 131924 49384611 ~ 49397912 (+)
AMCG00017172 NA coding downstream 151540 49404227 ~ 49415962 (+)
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding downstream 228538 49481225 ~ 49482420 (+)
G18791 NA non-coding upstream 26646 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 911097 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 1172884 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 1383244 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 1758646 47478978 ~ 47479256 (+)
G18865 NA non-coding downstream 183577 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 329577 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 420398 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 901671 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 902766 50155453 ~ 50155825 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4276301 44949034 ~ 44961601 (+)
G18192 NA other upstream 4581804 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5099971 44126214 ~ 44137931 (+)
G17697 NA other upstream 6840115 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 9983412 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 119335 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 149844 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 460780 49713467 ~ 49727567 (+)
G19113 NA other downstream 1299193 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 1306763 50559450 ~ 50563278 (+)

Expression


Co-expression Network