AMCG00017165


Basic Information

Item Value
gene id AMCG00017165
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49141599 ~ 49204142 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017165
ATCACAGATTTGGGTAACCTCAAGAGAAGATTGTATTTATCCACAGTCCACAAGGAGCTATCTGCCACACCTTTACATGCAAAAATACCTCTTTCAGGTGTCAAACGCAGCACTTGGTGTAATATGTGCATTGATCTCGGTTCATTTACCACTGAGGTATTCAAAGGAGCAGCATTTCTGTCTTTAGATGGAATAATTGTCTCTGCATGCTGTAAACTGAGGAAAATCTTTACCATGAAAATACATCCTCAAGACACTTTGAATGTACATGGTCTATATATCAGTAGTCCAACAGACATAATCCCAAGAAGCTGTCAGTTTCCAGCAGATGTACGCCATGTTACACAGGTGATAAACATGGATAATCTCCGGCTGGCTGAAATCAAGTTCAGTGGAAGTTCCTTATTTTCAGAATGTGAGCAGACAAGCAGTTCCAGATCAGCAAGTGCCCGTGGCAGTAAAAACCAGGACGCATCCCATATTGCATTTGGATCAAGAGTTCAGGGCCCTCCCCCTGTTACTGGAAGGAGAACCAGTGCCACGGGATTAAGGGAGGTAAAGAaatttggttttgaagatataaTGGACAGCTCTGGTGGCAACAACATGAGCAAGACCTActgccaggagagagagagtagtgTGGACAGGTCAGAGAGGCAGACCAAGCAATATGACGTTCCCAGTGCCAGACACCTGGAGATACTGCAGGGAAGGACTCGAGAAGATAGACAACCATCTCAGTTATTCCCAGACAAGTGGCACTCCTCCGACCAATCAGAGGACAGCATTGGTTCCAATTCTTCTGGTCAGGCCCTGGTGGGTCTTCAGGCAGTCAGCCCTGATTTATACCTCCCAATGAAGGGGAGTGACAGAGAAGACAGCAGCGGAGATGAGGGAATAGAGCCTCAGCTGAAATTGAAGGACATTTTCACTTACTCGTCAAGGCCACACTCTGCCAAACACAGACAACAAAGCGTGCCGGTGGAGGTCTTCCTATCCCTTTCGGCCTCAAGAGGAGATGGCGACAGCGATCAAAGAGGGGCTCGACTGGAAGACGATTTCCTTGGAGGAGACAGTGAAGAGgatgaaGTCCATTTCAGATTTTTCGGTCAAGATCCCATCCTCCAGTCCAGCTCAAATTCATCAGCATGGCCATACTCAGAAGATACAGCACAGCTATCCCGTGGGCCTGATCTCAGGTCAGCAAGAGATTCCTTACAAACTAATCCAGCAGGTAAAAAGATGCCTCTGGGGGGCTTCGCTCCCCTGAAGACAGCAGACAGAGAAAAGGCTCAGACAAGTGTGGTTCCCATCCGCAGCCTTTCTCCAGCCGGAACAAGGCGTGGGGAGAAGCTGGACCATTCAGAATCGATTAAAATTGCAAGTAACGGTCAAGATAACAAATTACGAACTTCCCTGAGCAGGAAATCCCTTAAAGAAATCCGAAGAGATGAGTCGAGGCAGAATATAGACAATTcaGAGTTTGACTGGAGGAACTACCGACCAACTCGAATGAGTGCCTCTGAGCTGCACATGCTGGCGAGTCTCCGGAGACAGCAAGACGAGGAACTGCAGGATGAAAGCAACTCTCCAGGCCTCAGCGCTTCCCAGATTGACAACTGTAACGTCAGCATCAGCACCAGCAGTGACGACACGACCACGTGGAACTCCTGTCGATCTCCTGAAATGAGATTGCAGCTGCAGAAGACACCGATGATGACGAAGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017165 True 1731 mRNA 0.48 9 49141599 49204142

Neighbor

gene id symbol gene type direction distance location
AMCG00017161 NA coding upstream 117969 48785168 ~ 49023630 (+)
AMCG00017157 NA coding upstream 665115 48475368 ~ 48476484 (+)
AMCG00017155 LOC108271493 coding upstream 680964 48455495 ~ 48460635 (+)
AMCG00017156 cadps,LOC106582941,LOC106565849 coding upstream 693902 48361348 ~ 48447697 (+)
AMCG00017154 NA coding upstream 788853 48352396 ~ 48352746 (+)
AMCG00017163 NA coding downstream 7715 49211857 ~ 49221883 (+)
AMCG00017164 NA coding downstream 33760 49237902 ~ 49252687 (+)
AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding downstream 61319 49265461 ~ 49278686 (+)
AMCG00017166 NA coding downstream 156685 49360827 ~ 49368839 (+)
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding downstream 180469 49384611 ~ 49397912 (+)
G18722 NA non-coding upstream 814794 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 1076581 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 1286941 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 1662343 47478978 ~ 47479256 (+)
G18470 NA non-coding upstream 2103076 47028787 ~ 47038523 (+)
G18791 NA non-coding downstream 2666 49206808 ~ 49211256 (+)
G18865 NA non-coding downstream 232122 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 378122 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 468943 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 950216 50154358 ~ 50154694 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4179998 44949034 ~ 44961601 (+)
G18192 NA other upstream 4485501 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5003668 44126214 ~ 44137931 (+)
G17697 NA other upstream 6743812 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 9887109 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 167880 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 198389 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 509325 49713467 ~ 49727567 (+)
G19113 NA other downstream 1347738 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 1355308 50559450 ~ 50563278 (+)

Expression


Co-expression Network