AMCG00017167


Basic Information

Item Value
gene id AMCG00017167
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49372022 ~ 49382218 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017167
aacaTTTTCATACTGGTTCTTATTGGAATAGCATTTTTGATAATCGTGCAACGCAATCTTATCAACTTGAATGACTTTTTGAGAAAAGAAAATTCTgaATCTGTCCTACTGCAGCCCCATGAGTCTGACTATGAGATCAAATCTCCCAACAAGTTAGGAGTTTCAGCAACAGGTGTAGAAATTCCTGTGGTGATCACTGCTGTGGATGAGAGACTTGGAGCTTTAATAGCTGCGATGAACAGCATTTACAGCAATAGTAAATCCAACATTGTTTTCCACATTGTAACAATGAATGACACTGTAGATCATTTAAAagcATGGCTTAGCAAAACTGCCCTTCATGCAGTCAAATACAAAATCTTGCAGTTCAATCCAAAGGTTTTGGATGGAAAAATATCAAAGGATCCTCAGCAGGCAGAGATGATTAAACCGttaaactTTGCAAGATTCTATCTGCCTTCATTCGTACCAGATGCAGAGAAAGCAATTTATTTGGACGATGATGTCATTGTGCAAGgagATATTCAGGAACTGTTTGATGCCCAGCTGAAAGCAGGACATGCAGCTGCCTTCTCTGATGATTGTGATTCAGCTTCTTCCAAAGCCATTGTCAGGGGGGCAGGAAACCAGGTAGGGCTAGATCCTGGACAGGACAGTTTCTGCAGCTTTTACGTCTCATTACTCACAACACTAAACAACTACATTGGCTTCTTGGACTTCAaaagggaaacaataaaaaaactggGAATGCGGGCCAGCACTTGCTCTTTCAACCCGGGGGATCTGTACAGCAGAACCTTAGCAGGTAGTGTTACTACCCCACCTTTACTGATCGTGTTTTACAAGCAACACTCAACCATTGATCCCATGTGGCATGTGAGGCACCTTGGTTCTGCTGGAGCCGGAAACCGTTACTCATCCCAGTTTGTGAAAGCTGCCAAACTGCTGCACTGGAATGGCCATTTCAAACCCTGGGGGAGGGCATCGTCTTTCTCGGACTTGTGGGACAAATGGTACATTCCGGATCCGACAGtTCTTCAAGCTaagagacagaggaagaaaaGT
>TU23352
TTCCACTTAAAATGAGAACAGACATACATTTAGTACTCTAATGAGGATCTAAACTAACCATGTCCAGTAAATCATTGCGCACAGGagattttctctcttttccaaTGGAAAGGAAATACACAGCAAGCAGAATTGGAGTCATCATTTTTAAGACAATGTTACATCTTTTGCATAAGTGCCGTGTATCATTTGATCTGGGTTTAGACAGGCAACATTAGGTAGTCCTAAACTAATCTTCTTATACGTATaataaagtgaataaagttacattAAATCATTGACATACCAATTTTATTCAACACAAAGACAAGTTTCTTGTTTCCTTCATGCTTTAATACTTTCTCTTCCAACTGTGGGCATCGACAGCCAAGAGGGTCCCTGGCATCCAGAACTACAGCAATGACATCGGAGGCATCAATGACCTGTTCAACTCTACAGCTTGAGCATAGTTTTGAGCATTTTTATCATTACCGTTGGCTGCTTTCACTGGCTGCTGTGCAGGTTTCTCCTttttttgcttttttagcAGAAGACTCTGGgtcatttttttctgcttctcgTTTTCTTTTCTTCGCTCGCTCCTTCTGTTTCGCaagtttctttttctcttttagtTCTTCAAG

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017167 True 1065 mRNA 0.43 9 49372022 49382218
TU23352 False 623 lncRNA 0.38 3 49380603 49382195

Neighbor

gene id symbol gene type direction distance location
AMCG00017166 NA coding upstream 3183 49360827 ~ 49368839 (+)
AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding upstream 93336 49265461 ~ 49278686 (+)
AMCG00017164 NA coding upstream 119335 49237902 ~ 49252687 (+)
AMCG00017163 NA coding upstream 150139 49211857 ~ 49221883 (+)
AMCG00017165 NA coding upstream 167880 49141599 ~ 49204142 (+)
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding downstream 2393 49384611 ~ 49397912 (+)
AMCG00017172 NA coding downstream 22009 49404227 ~ 49415962 (+)
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding downstream 99007 49481225 ~ 49482420 (+)
AMCG00017181 NA coding downstream 295946 49678164 ~ 49697848 (+)
AMCG00017182 LOC105893506,LOC108431510 coding downstream 325317 49707535 ~ 49709079 (+)
G18791 NA non-coding upstream 160766 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1045217 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 1307004 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 1517364 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 1892766 47478978 ~ 47479256 (+)
G18865 NA non-coding downstream 54046 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 200046 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 290867 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 772140 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 773235 50155453 ~ 50155825 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4410421 44949034 ~ 44961601 (+)
G18192 NA other upstream 4715924 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5234091 44126214 ~ 44137931 (+)
G17697 NA other upstream 6974235 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 10117532 39239073 ~ 39254490 (+)
AMCG00017173 NA other downstream 20313 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 331249 49713467 ~ 49727567 (+)
G19113 NA other downstream 1169662 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 1177232 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3432035 52814253 ~ 52817369 (+)

Expression


Co-expression Network