AMCG00017169


Basic Information

Item Value
gene id AMCG00017169
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49376523 ~ 49383368 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017169
ATGAAGAGGCCGAagcTAAAGAGAGCAAGTAAGCGATTGACATGCTCCAAAcgatataaaatacagaaaaaggttCGTGAGCacaacagaaaactaaaaaaagatgcaaaaaagaaaggaacaaaaCGGGTAAAAAAAGATCCCGGGGTTCCCAATAACGCTCCATTCAAAGAGGAGATTCTCAGGGAAGCAGAAAGCAGGAAGCTGAAGCTTGAAGAactaaaagagaaaaagaaacttGCGAAACAGAAGGAGCGAGCGAAGAAAAGAAAAcgagaagcagaaaaaaatgacCCAGAGTCTTCTgctaaaaaagcaaaaaagGAGAAACCTGCACAGCAGCCAGTGAAAGCAGCCAACGGTAATGATAAAAATGCTCAAAACTATGCTCAAGCTGTAGAGTTGAACAAGGTCATTGATGCCTCCGATGTCATTGCTGTAGTTCTGGATGCCAGGGACCCTCTTGGCTGTCGATGCCCACAGTTGGAAGAGAAAGTATTAAAGCATGAAGGAAACAAGAAACTTGTCTTTGTGTTGAATAAAATTGATTTGGTGCCTAAAGAGAATGTGGAGAAATGGCTGGAATATCTTCAGGAGTTCCCAGTTATCGCTTTCAAGGCATCAACACAGATTCAGGAGAAAACAGTGCAAGAGAAGAAGCGAAAAAAAGCCAATGGAGCTATTGATTTAAGTAAGGGTGTTGCCTGTCATGGGAGCGGCAGTCTGCTCCAGCTTTTCGAAGACTATTGTCAGACGCAGAAGGAAGGGAATCAACTGAAGGTTGGCATTGTGGGCTTCCCCAACGTTGGGAAGAGCAGTCTGATAAACAGTATGAAAGGAATCCGGGCTTGTAATGTGGGAGTGGAAAGAGGAACTACAAaATGTGTGCAAGAGGTACACATAAACAAATTCATCAAGATGATTGACAGTCCCAGTATCATTGCGGCTCCATCCAgctctgctgttgctttggCGCTGAGGAGTTTACCAGAgactgaaaaggaaagaaacccTCAGGATGCAGTCAGAGCCCTTCACAAACACAGTGATAAACAGCAGATCATGCTTCAATATAATGTACCTGACTTCAGAAACGCTCTGGAATTTTTGACGTTTCTTGCCAAGAAACGAGGGTATTTGCAGAAAGGTGGCATTCCAGATACAGAGAAAGCTGCAGCGATCTTTCTGAATGATTGGACCGGGGCTAAAATGAGTTATCATTCTAAACCACCCGAGGAACATGAGCTTCCACCGTACCTCTCCGACTCCATGGTGGCGGAGATGCAGGTGATGTGGAGTGTGGACAAGCTGCAGCAAGCCAACGTGAAGACCATTGCTGGGCTGAAGTTTCCCAATATAGCAAGCAGCATTTTGTTCCAGTCCAAAGGCCCCACGCCTGGCCTTGTGAACGAGAGAGAACTGAGTCTGGCACTGGAACCAGAGGAGGCAGTGGCCGAAGACGacagtgaggaagaggagCCTGAATTGGTTCCAATTGTGcctgaaacacaaaaaggaCTTCAAgagcacaaacaaaagagaCCATTAAAAGCAGAGACTTCGGCTGAACCACCGAAAAAAGCAAATGCAGGAGTTCCACCCAAACTGCAAATAAGGCAGATGCCAGTTAGCATCGATTTTTCTTCAGCAGAGCAAGATGATGATGCATATGACTTTAACGCCGATTTTAATTGACAGTATTACCAGTCACTTGAGTTATGCCAATGCTGGTGAACAAAGCAGACTTACTAAGTAAGGTTTAAGTTGTGTGTCAATGCATGCAACACCAGTATAATCCTAACAGCTATTTACCTGTGTAAATAACTATGTGAATTATTGTACATATCCTTAAAGCATACGCAGCCATGTAGTTTAAGGGTTTCCAACATTTGTCCTGGagtactctgtgtgtgtgcaggttttTGATCCAACAGCGTttgtaattacttaattgaacccttaagtAAACTAAAGATGCATATCTAGACCTTTTTTGGTTCTTAGTGATAAAGACTTAAAGCTAGCGGTTGTAAATTGAAGTGTAAGGACCTGAAGATAACGAAAATATTTCTTTAAGCATATTTGGTAATAACTTGGTTTAAGAGTAACTAAAACAAGCAAAAGATAATACTTCCTAATGGGGATTTTTAAACCCCATTTTTTT

Function

GO: NA

KEGG:

id description
K14538 NUG1, GNL3; nuclear GTP-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017169 True 2164 mRNA 0.42 15 49376523 49383368

Neighbor

gene id symbol gene type direction distance location
AMCG00017170 NA coding downstream 5565 49369576 ~ 49370958 (-)
AMCG00017168 LOC105028385,LOC106583015,LOC100136667 coding downstream 57604 49301962 ~ 49318919 (-)
AMCG00017160 LOC107752167 coding downstream 788884 48584476 ~ 48587639 (-)
AMCG00017159 ptprg,LOC107592848 coding downstream 817088 48503918 ~ 48559435 (-)
AMCG00017151 NA coding downstream 1030772 48323815 ~ 48345751 (-)
AMCG00017175 NA coding upstream 20754 49404122 ~ 49447336 (-)
AMCG00017174 nisch coding upstream 72126 49455494 ~ 49477304 (-)
AMCG00017177 dusp7,LOC107712495,LOC107677944 coding upstream 196221 49579589 ~ 49589402 (-)
AMCG00017180 poc1a,LOC108424582 coding upstream 260779 49644147 ~ 49653221 (-)
AMCG00017179 NA coding upstream 285833 49669201 ~ 49675834 (-)
G18832 NA non-coding downstream 6972 49368618 ~ 49369551 (-)
G18831 NA non-coding downstream 8461 49367481 ~ 49368062 (-)
G18830 NA non-coding downstream 10082 49365206 ~ 49366441 (-)
G18829 NA non-coding downstream 12221 49363749 ~ 49364302 (-)
G18828 nek4,LOC106565859 non-coding downstream 14597 49361660 ~ 49361926 (-)
G18945 LOC105893506,LOC108431510,LOC106566656,LOC107586924,LOC107593103,LOC107704447 non-coding upstream 324298 49707666 ~ 49709260 (-)
G18961 NA non-coding upstream 341829 49725197 ~ 49725675 (-)
G18962 NA non-coding upstream 342952 49726320 ~ 49726935 (-)
G18970 NA non-coding upstream 379829 49763197 ~ 49765192 (-)
G19030 atp2b2,LOC107561799,LOC107570616 non-coding upstream 677479 50060847 ~ 50071504 (-)
AMCG00017158 NA other downstream 882116 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 4215386 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 4719618 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 5716921 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 6067897 43305697 ~ 43308626 (-)
AMCG00017178 NA other upstream 103829 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 1800863 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 2047319 51430687 ~ 51435239 (-)
G19335 NA other upstream 2062219 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 2463228 51846596 ~ 51860267 (-)

Expression


Co-expression Network