AMCG00017171 (pbrm1,LOC107699352,LOC107744848)


Basic Information

Item Value
gene id AMCG00017171
gene name pbrm1,LOC107699352,LOC107744848
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49384611 ~ 49397912 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017171
ttttttttttttttttccttcctaaTCAGAGCCAGGTATCCTCTGCGTGTACATAACTGTTATACATCAATTCAAAGGTATTGCTTCTATGGGTTCCAAAAGGAGAAGGGCCACTTCCCCTTCCAGTAGTGTTAGTGGGGGGGACTTTGATGATGGCCAGACTTCAACCCCAGCCCCAGGAAGCGGCAGAAAAAGGAGAAGAGCTTCCAATATTCCCACTGTAGATCCAGTAAGTGGATTTCCAAGTATTGTTCCACCTTTACAAAGAGACAGTGAGCACAACAAGCGGAAAAAGATTGCGGTGTGCCATGAATTGTATAACACAATTAGAGATTACAAGGATGACCACGGGAGACTGCTGTGTGAGCTCTTTATTAGAGCACCTAAACGCAGGAACCAACCTGACTACTATGAAGTAGTAACTCAGCCCATTGACCTGATGAAGATACAGCAGAAACTGAAGATGGAGGAATATGATGACGTTGAGCATCTCACTGCTGATTTTCAGTTATTGTTCAACAACGCAAAGAGTTATTACAAGCCTGATAGCTCCGAGTATAAAGCTGCCTGCAGACTGTGGGACCTGTACCTGCGCACAAAGAACGAGTTTGTTCAAAGAGGGGACTATGAGGAGGACGACGAGGATGGGGAGAACACCCAGGAGAATCCGGGAACATCGACTGAAGAAGAGACTCCGCCGAGCTGTTTGAAGGAAGTCCTGGAGCAGCTCCTGGAGGCGGTGGTAACCCACAGTGAGCCATCTGGTCGCCTCATCAGCGAGCTCTTCCAGAAACTGCCTTCTAAAGTGcatTACCCTGACTATTATGCAATAATAAAGGAGCCTATAGATCTGAAGACCATTGCGCAGAGGATACAGATGGGCTCGTATAAGAGTGTGAATGCCATGTCCAAGGACATAGACCTTCTGACAAAAAATGCCAAGACCTATAATGAACCAGGATCGCAGGTTTTTAAGgatGCAAACACCATTAAGAAAATTTTCATTCAGAAAAAGACTGAAATTGAGCATGCCGAACCCACTAAATCAAGTATCCGCATAAGGAACCGGAGATCTGCTCAGGGAGACCGCCTGTCAGCCATCACCATGGCCCTGCAGTATGGCTCGGAGAGTGACGAGGATGCCCTTCTGGCGGGAGCCGTGCGGTACGATGAAGGGGAATCAGAAGCCGAGAGCATTAATTCTTGCATGGATTTGAACAACCCCATTTTCCAACTGTATGAAGCAGTGAGGGGTGGTCGCAATAGCCAGGGGCAATTGATAGCTGAGCCGTTTCTTCAGCTCCCTTCAAAGAAGGAATATCCAGATTACTTTCACCAGATAAAGCAGCCCATTTCCCTGCACCAAATAAGAAACAAGATGAAGAACAATGAATATGAAAACCTAGATCAGATTGATTACGACCTAAACCTGATGTTTGAAAATGCCAAACGCTACAATGTGCCCAACTCTGCCATCTATAAGCGTGTTATGAAGCTCCAGCAAATTCTACAGATGAAGAGAAAAGACCTGGTGCGCAGAGAGGAGGCCGAGGACGGAGACAGCATGCTCTCATCTGCCACGTCAGACGCTGGCAGTGCCAAGAGGAAGAGGTACAGTTTCAAGAAGAACACCAAGAAGCACCGGCTGAAGATCCTGTACACGGCCGTGACCGAGGCCCGGGAGACCTCCACTGGCAGGAGGCTGTGCGATCTCTTCATGGTCAAACCCTCCAAGAAGGACTACCCAGACTACTACAAGATCATCCTGGAGCCAATGGACTTGAAGACCATCGAGCACAATATCCGCTCGGACAAGTACCTCACGGAGGATGTGTTCATGGAGGACATGAAGCTGATGTTCCGCAACGCCCGGCACTACAACGAGGAGGGCTCGCAGGTTTACAATGACGCCAACATTCTGGAGAAGATACTGAAGGAAAAGAGGAAAGAGCTGGGGCCGCTACCCGAAGAGGAGGACATGGCTTCTCCCAAGCTAAAAATAAGCAGAAAGAGCGGCGTTTCCCCCAAGAAGTCCAAGTACCTGACCCCGTTGCAGCAGAAGCTGAACGAGCTGTACGAAGCAGTGAAGAACTACACCGACAAGCGCGGCCGCCGTCTCAGCGCCATCTTCTTGAGGCTGCCGTCCCGAGCTGAATTGCCCGACTACTATGTGACCATCAAGAAGCCCGTGGACATGGAGAAGATCAAGAGTCACATGATGGCCAACAAATACCAAGACGTGGACTCCCTGGTGGAAGACTTTGTCCTCATGTTCAACAACGCCTGCACCTACAACGAGCCGGAGTCCCTGATATACAAAGATGCTCTTGTGCTCCACAAGGTCCTTCTGGAGACGAGGAGGGACTTGGAAGGCGGGGAAGACTCGCATGTCCCCAATGTCACCCTCCTGATTCAGGAGCTGATCCATAACCTGTTTGTGTCGGTGCTGAATCACCAGGATGACGAGGGCCGCTGTTACAGTGACTCCCTGGCCGAGATTCCTGCCAGAGATCCGGGCAACCCCAGCAAGGTGCCCTTGAACTTCGAGATCATCAGAACCAACATCGAAAACAGTCGGTACAGGCGTCTTGATGTATTTCAGGAAAATATGTTTGAGGTACTGGAGAAAGCGAGAAGGCTGCACAGAACCGATTCGGAAATCTTCGAGGACGCCGTGGAGCTGCAGCAGTTCTTCATCAAAATCCGCGATGAACTCTGCAAGAACGGGGAGATCCTTCTGTCGCCGGCGCTGAGCTACACCACCAAACACTTGCATAACGAcgtggagaaggagaagaaggaaaagcTGCCAAAAGAGATGGAAGAAGATAAACTGaagagagaagaagagaagaagGAGGCTGAGAAAAATGATGACCACTCTGGAGGAACCTGGCAGTCTGGGAACTTGCAGCGGACTTACAGCCAGGACTGTAGCTTTAAGAACAGCATGTACCATGTCGGAGATTATGTGTATGTGGAGCCAGCAGAGCCCAATCTGCAGCCCCATATCGTCTGCATTGAAAGACTATGGCAAGATGATGCTGGGGAGAAATGGCTGTACGGTTGCTGGTTCTACAGGCCCAATGAGACTTTTCATCTGGCCACACGCAAGTTTCTGGAGAAAGAAGTGTTTAAGAGTGACTACTATAACAAAGTTCCTGTTAGCAAAATCCTTGGAAAATGTGTGGTGATGTTTGTAAAGGAATATTTCAAGCTACACCCAGAGGGATTCAGGCCAGaggatgtgtttgtttgtgaatCCCGTTACTCAGCCAAGACCAAGTCCTTCAAGAAGATCAAAATGTGGACCATGCCAGTGAGCTCGGTAAAGTTTGTGCCCCGTGATGTGCCATTGCCAGTTGTAAGAGTTGCTTCCATGTTTGCTAATGCTACAAAACACGAACAGGAGAAGTCGCCAGAATTGACGGAGGAAGGCAAAGGAGTGGATGCGAATGGAATAATCGATAAGGAGAAGGAAGATGTTCCTGTGGAGATGCCCAATGGAGAACCAGGCTGCCAGTATTACGAGCAGCTTCGATACAATGACACCTGGCTGAAAGTGGGTGACTGTATGTTCATCAAGTCACATGGCTTAGTACGGCACAGAGTAGGAAGGATTGAGAAGATGTGGGTTCGAGATGGTGCTGCTTATTTCTTTGGACCAATCTTCATCCACCCCGAAGAGACAGAGCATGAGCCAACCAAGATGTTCTACAAGAAGGAAGTGTTCCTCAGCAACCTTGAGGAGTCCTGCCCCATGTCCTGTGTAATAGgAAAATGTGCCGTGTCTTCATTCAAGGACTACCTCTCCTGTCGGCCCACAGAGGTGCCCGAGGAGGATGTGTTGCTCTGCGAGAGTCGCTACAACGAAAGCGATAAGCAGATGAAAAAGTTTAAGGGGCTGAAACGCTTTTCCCTCTCGGCTAAAGTGGTGGACGATGAAATCTACTATTTCAGGAAACTGATTGTGCCGCAGAAAGAGCCATCCCCTCTGCTGGAGAAAAAGATTCAGGAGCTGGAGGCCAAGTTTGCGGAGCTGGAAGGCGCTGATGATGAAATGGAGGAGCTGGGCGAAGAAGACGGAGAGGTGACCGAGACTCCATCTATGCCCCAGCTACAAACGCCTTTAGCCAGTGAGCTGGACATCATGCCGTATACCCCTCCGCAGtCAACTCCAAAATCTGTGAAAGGAGCCACTAAGAAAGAGGGATCCAAGAGGAAGATCAATATGAGTGGCTACATCCTGTTCAGCAGTGAGATGAGAGCGGTCATAAAGGCCCAGCACCCAGACTTCTCTTTCGGGGAACTGAGCCGACTGGTAGGAACCGAGTGGAGAAACCTGGAGACCACCAAGAAAGCCGAGTATGAAGaGCGGGCAGCCAAAGTAGCAGAACAGCAGGAGAGGGAACGGGCAGCCCAACAGCAACAGGGTGCTTCCCCCAGAGCTGGTACGCCCGTAGGGGCTCTCATGGGGGTTGTGCCTCCCCCAACCCCAATGGGAATGCTTAACCAGAACATGACTCCTGGGTCAGGCATGATGGGTGGCTATGGGCCGCCTATGCTACCCTTACAGGGCCCAGTTGATGGCATGGTCAATTTGGGCAGCATGCAGCCACATCACATGGGGGTACCTCCTTTACCCCACCATCTTCAGCCAGGTATGCCAGGCATCCCCGGCATCCCATATCCGGGTGTCCTGGGACAGGGTGTCAACGCCATGGGAGGAAGTCCTGGCACTGGAAATCCATATGGGCAGCAGATGGGCATGCTTggacagggccagcaggctcctCCTCCGTACCCAGGTCAGGGTCAGCCGGGACAGCCAGCTCTGCAGCAGCCTTCCACCCCCATATTTGTGGCACCTCCCCCGAAGACCCAGCGCCTTCTGCATTCGGAGGCCTATCTGAAGTACATCGAGGGGCTCAACGCCGAGTCAGGCACCGTGAGCAAATGGGATCAGACTCTGACAGCTCGCAGAAAAGACGTCCACTTGAGCAAAGAGCAGGAGGGCCGCCTCCCGTCTCACTGGCTGAAGAGCAAAGGGGCCCACACCACGATGGCGGACGCACTCTGGCGCCTGCGGGACTTGATGCTGAGAGACACCTTAAACATCCGCCAAGCCTACAACGTGCAAAATGTCTAGGCCATTCCCCTTTCGGTTATCTTTTAATAAGCTCGGTGCGAGAGGGTGATCCATAGGTCATGAAAAGcagtaatattttattgtacattattgaaatatttgctTGAGTTTTATAGACGATAaggttcattttcatgttttgttcattttgccCAACTCATCATTCTTTTAAAGAGCATTCTGGTTTTTATTGCTGTCAAATTTATCtggttcttttttttgttttgtttcttgtcaaAAGGCTTAATCTGTTGTACTGAAAATGGAAGtaacttttcattaaaaaaaagaaaaactga

Function

symbol description
pbrm1 Predicted to enable DNA binding activity and chromatin binding activity. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of RSC-type complex. Is expressed in somite. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human PBRM1 (polybromo 1).

NR:

description
PREDICTED: protein polybromo-1 isoform X2

GO: NA

KEGG:

id description
K11757 PBRM1, PB1; protein polybromo-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017171 True 5448 mRNA 0.50 29 49384611 49397912

Neighbor

gene id symbol gene type direction distance location
AMCG00017166 NA coding upstream 15772 49360827 ~ 49368839 (+)
AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding upstream 105925 49265461 ~ 49278686 (+)
AMCG00017164 NA coding upstream 131924 49237902 ~ 49252687 (+)
AMCG00017163 NA coding upstream 162728 49211857 ~ 49221883 (+)
AMCG00017165 NA coding upstream 180469 49141599 ~ 49204142 (+)
AMCG00017172 NA coding downstream 6315 49404227 ~ 49415962 (+)
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding downstream 83313 49481225 ~ 49482420 (+)
AMCG00017181 NA coding downstream 280252 49678164 ~ 49697848 (+)
AMCG00017182 LOC105893506,LOC108431510 coding downstream 309623 49707535 ~ 49709079 (+)
AMCG00017184 NA coding downstream 350931 49748843 ~ 49765192 (+)
G18791 NA non-coding upstream 173355 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1057806 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 1319593 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 1529953 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 1905355 47478978 ~ 47479256 (+)
G18865 NA non-coding downstream 38352 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 184352 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 275173 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 756446 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 757541 50155453 ~ 50155825 (+)
AMCG00017167 NA other upstream 2393 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4423010 44949034 ~ 44961601 (+)
G18192 NA other upstream 4728513 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5246680 44126214 ~ 44137931 (+)
G17697 NA other upstream 6986824 42391297 ~ 42397787 (+)
AMCG00017173 NA other downstream 4619 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 315555 49713467 ~ 49727567 (+)
G19113 NA other downstream 1153968 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 1161538 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3416341 52814253 ~ 52817369 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003852 pbrm1 coding NC_007122.7 CM002895.2 3909756 ~ 3959889 (-)
grasscarp (Ctenopharyngodon idella) CI01000057_02656843_02688559 PBRM1 coding CI01000057 null 2656843 ~ 2689532 (-)