AMCG00017172


Basic Information

Item Value
gene id AMCG00017172
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49404227 ~ 49415962 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017172
ATGGCTCTGGGGCTGTTAAAGAGCATCCGCGTCGGGTTGCAGAAGGGAGCGGCTGGCTGCACCGCCCTGCACGGTGTCACTGCGTCGTGTCAGTGCCGCTCCGATGCCAAGCGCCCCCCGTCCCCCGGGCCCCAGCAGCACCACCGCAGCAGGGCCAAGAGGTCGGTGAGCATTGCGCCTGAGAAAGTGCACGACAAAACATACCTGTGGGCAAGATACCGAGAAATGAAAAAGCTTGTTTATGATCTTCTTCCACCTGGCGTGTGCAGCCTTCTCAATCCTGCCACCATCTATGCCAACAATGAGATCAGCTTGGGGGATGTGGAGATCTACGGCTTTGACTATGACTACACTTTGGCCCATTATTCGAGTTTTCTGCACACAATGATTTTTAACAAGGCCAGAGAAATCCTACTTGAGCAGTACAAGTATCCAAAAGGCATTAAGAGCTATGAATATATCCCCAGTTTTGCTATAAGAGGTCTCCACTATGATGTACAAAAAAGTCTTCTGATGAAGATCGATGCCTTCCACTATATTCAGTCCGGAACAGCATATAGAGGCCTTCAGCCCGTGTCAGACCAGGAGGTGATTGAGATGTATGGAGGGACTCAGCACATCCCACTGCACCAGATGAGTGATTTCTATGGGAAGGGTCCCATCGTTAAGCAATTCATGGATATATTTTCCCTCCCTGAGATGACCCTGCTGTCCTGTGTCAATGACTATTTCATCACCCACAACATTGAGTTTGATCCAGTTCACCTCTTCAAAGATGTCACGgatTCCATTAAGGATGTCCATGTGAAGGGAATGATGTACCAATGGATTGAGAAAGACATGGAGAAATACATCCTCAATGGAGATGAGACCTACGCTATCCTGAACAGGCTGGCAAACAGTGGGAAAAAACTCTTTCTCATTACCAACAGCCCCTTCAGTTTTGTTGACAAAGGCATGAAACACATGGTTGGGAAGCACTGGAGGGAACTGTTCGATGCTGGAAACTTGTACGATTTCCTGCAGTTGACTGGCTGGAGAGGACCCAAAGTGCTGTATTTTGGGGACCACTTGTACAGCGATCTCGCAGACCTTATGTTGCGTCACGGCTGGAGGACAGGGGCCATAGTGCCCGAGCTGCACACGGAGATCCGCATCATCAACACGGAGCAGTACATGCACTCCCTCACCTGGCTACAGGCCCTCACTGGCCTGCTGGAGAGGATGCAGGTGCACCATGATGCTGAATCAAAGATGGTCTTGAATGAATGGCTTAAGGAGCGACAGGAGCTGAGGTCTGTCACAAAGAACCTTTTCAACCCCCAGTTCGGGAGCATTTTCCGGAGCTACCACAACCCCACCTACTTCTCCCGACGGCTGTGCCGCTTCTCGGACCTGTACATGTCGTCGATCAGCTGTCTGCTCAACTACGACCTGCAGTATACCTTCTACCCCCGGCGCACCCCCCTGCAGCACGAGGCCCCGCTGTGGATGGACCAGCTGTGCACAGGCTGCATGAAGACACCGTTTCTGGAGGAAATGGTACACATCCGCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017172 True 1557 mRNA 0.52 13 49404227 49415962

Neighbor

gene id symbol gene type direction distance location
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding upstream 6315 49384611 ~ 49397912 (+)
AMCG00017166 NA coding upstream 35388 49360827 ~ 49368839 (+)
AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding upstream 125541 49265461 ~ 49278686 (+)
AMCG00017164 NA coding upstream 151540 49237902 ~ 49252687 (+)
AMCG00017163 NA coding upstream 182344 49211857 ~ 49221883 (+)
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding downstream 65263 49481225 ~ 49482420 (+)
AMCG00017181 NA coding downstream 262202 49678164 ~ 49697848 (+)
AMCG00017182 LOC105893506,LOC108431510 coding downstream 291573 49707535 ~ 49709079 (+)
AMCG00017184 NA coding downstream 332881 49748843 ~ 49765192 (+)
AMCG00017185 NA coding downstream 352998 49768960 ~ 49780898 (+)
G18791 NA non-coding upstream 192971 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1077422 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 1339209 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 1549569 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 1924971 47478978 ~ 47479256 (+)
G18865 NA non-coding downstream 20302 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 166302 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 257123 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 738396 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 739491 50155453 ~ 50155825 (+)
AMCG00017173 NA other upstream 382 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 22009 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4442626 44949034 ~ 44961601 (+)
G18192 NA other upstream 4748129 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5266296 44126214 ~ 44137931 (+)
AMCG00017183 NA other downstream 297505 49713467 ~ 49727567 (+)
G19113 NA other downstream 1135918 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 1143488 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3398291 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 3405099 52821061 ~ 52834042 (+)

Expression


Co-expression Network