AMCG00017173


Basic Information

Item Value
gene id AMCG00017173
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49402531 ~ 49403845 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017173
CTATAAATATCGTTTACCTAATCCAATGATATTATTGAtggtttttgtatgtttgttttttgtgtgcgaAATCTCGGCAATTAAACGAAGATGTAAAACGAACTTTAATGTTTAGTTAGCTGACCAAGTATGAGTTTATGAAAGCGATTGGATATGTTTGTCCGTATTGAGCTTCCGTAGCCGTCAAATATTTTCAGGAACACGTGTTCTTGAATAAGCATGTCGGCCTGAGTGTCAACACTGGTAGAGGACGTCCAAAGGGATACATAGACATGATAGAGTACATACAATTTTAAGTTGTGTATTCAGCTGAATTTATCTTCCAGTATAACAATGGGAGTACGTGCTCAATGAGATGCAtctgtgtagagcagtgttTATTCGTGTCCTTAATTTCCATCGATTCGGGAGGGAGATCTAGGTGAAACGCACAGTGTGACCATGCTCTTGGAAAGCCGAAAGATTAAATACATCCTCAGTCTGGTTCCTGGAAAGCGTCGCTTCGGGACGTACCGATTCCTGCCCTGTTTCTTCGTCTTGGGAGGCGTCATGGAGTGGATCATGATTAATGTGAGGATCGGCAAAGAAACCTTCTacgATGTCTATCGGAGGAAGCATTCAGAGAGGCGGCACCAGCAGAGGGTGGAGGAGGGTCTGGCTGTAGAGCAGGCGGGTGAATAACCTCGGGTGGCCCGCACTTCTCTGCCTTTAGCCGGGGGCGGCTCTGCGGTTATTTTCGGATCTGGTGACTCAACCCACGTGTGTTTGACTTGACGAGTCTGTGGCATATCAaacccaattaaccaattatcCCACGGCCTGTCTGATGTTACCTATTGTATtgtaaacatgtattaaatcaatgaaatatGAAACGTAAGTGTCTAGTGTATGTATTGATTGAAAAAGATGTATAGTACAATACGTATTATATCTGCTTTTGACACATGTctaatttgtattgaaaaaagtTTCATTAAGAATCGACCAGTTCCaacatctttaaaacatttaaaacagctgATTTGAGTTTTATGATCCAAAGATTGTGAACATcgtaataattgttttattaatacttttCTA
>TU23388
TATTTTCAGGAACACGTGTTCTTGAATAAGCATGTCGGCCTGAGTGTCAACACTGGTAGAGGACGTCCAAAGGGATACATAGACATGATAGAGTACATACAATTTTAAGTTGTGTATTCAGCTGAATTTATCTTCCAGTATAACAATGGGAGTACGTGCTCAATGAGATGCAtctgtgtagagcagtgttTATTCGTGTCCTTAATTTCCATCGATTCGGGAGGGAGATCTAGGTGAAACGCACAGTGTGACCATGCTCTTGGAAAGCCGAAAGATTAAATACATCCTCAGTCTGGTTCCTGGAAAGCGTCGCTTCGGGACGTACCGATTCCTGCCCTGTTTCTTCGTCTTGGGAGGCGTCATGGAGTGGATCATGATTAATGTGAGGATCGGCAAAGAAACCTTCTacgATGTCTATCGGAGGAAGCATTCAGAGAGGCGGCACCAGCAGAGGGTGGAGGAGGGTCTGGCTGTAGAGCAGGCGGGTGAATAACCTCGGGTGGCCCGCACTTCTCTGCCTTTAGCCGGGGGCGGCTCTGCGGTTATTTTCGGATCTGGTGACTCAACCCACGTGTGTTTGACTTGACGAGTCTGTGGCATATCAaacccaattaaccaattatcCCACGGCCTGTCTGATGTTACCTATTGTATtgtaaacatgtattaaatcaatgaaatatGAAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0070925 organelle assembly biological_process
GO:0061061 muscle structure development biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017173 True 1086 mRNA 0.41 2 49402531 49403845
TU23388 False 687 TUCP 0.47 2 49402719 49403634

Neighbor

gene id symbol gene type direction distance location
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding upstream 4619 49384611 ~ 49397912 (+)
AMCG00017166 NA coding upstream 33692 49360827 ~ 49368839 (+)
AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding upstream 123845 49265461 ~ 49278686 (+)
AMCG00017164 NA coding upstream 149844 49237902 ~ 49252687 (+)
AMCG00017163 NA coding upstream 180648 49211857 ~ 49221883 (+)
AMCG00017172 NA coding downstream 382 49404227 ~ 49415962 (+)
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding downstream 77380 49481225 ~ 49482420 (+)
AMCG00017181 NA coding downstream 274319 49678164 ~ 49697848 (+)
AMCG00017182 LOC105893506,LOC108431510 coding downstream 303690 49707535 ~ 49709079 (+)
AMCG00017184 NA coding downstream 344998 49748843 ~ 49765192 (+)
G18791 NA non-coding upstream 191275 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1075726 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 1337513 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 1547873 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 1923275 47478978 ~ 47479256 (+)
G18865 NA non-coding downstream 32419 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 178419 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 269240 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 750513 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 751608 50155453 ~ 50155825 (+)
AMCG00017167 NA other upstream 20313 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4440930 44949034 ~ 44961601 (+)
G18192 NA other upstream 4746433 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5264600 44126214 ~ 44137931 (+)
G17697 NA other upstream 7004744 42391297 ~ 42397787 (+)
AMCG00017183 NA other downstream 309622 49713467 ~ 49727567 (+)
G19113 NA other downstream 1148035 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 1155605 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3410408 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 3417216 52821061 ~ 52834042 (+)

Expression


Co-expression Network