AMCG00017176 (tnnc1,LOC106571909,LOC108232086)


Basic Information

Item Value
gene id AMCG00017176
gene name tnnc1,LOC106571909,LOC108232086
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49481225 ~ 49482420 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017176
ATGGTATATTTTAGACGTAGCCtttcagtctgtgtgtttgtgttttttaactcGGCCTCTCGATGTGTTACAGAGTTCAGAGCAGCCTTCGACATTTTCGTGCAGGACGCCGAGGACGGCTGCATCAGTACCAAAGAGCTGGGGAAGGTCATGAGGATGCTGGGTCAAAATCCCACTCCAGAGGAGCTACAGGAAATGATTGATGAGGTGGATGAAGATGGGAGTGGAACGGTGGATTTCGATGAGTTCTTAGTCATGATGGTGAGATGTATGAAAGACGACAGCAAAGGAAAATCAGAGGAAGAACTGGCCGAACTCTTCAGGATGTTTGATAAGAATGCTGATGGCTACATTGACCTGGAAGAACTAAAGATAATGCTGGAAGCCACCGGGGAGGCCATAACCGAGGATGATATAGAGGAGCTGATGAAAGATGGAGATAAAAACAATGACGGAAAGATTGATTATGATGAGTTCCTGGAATTCATGAAAGGAGTGGAATAA

Function

symbol description
tnnc1 Enables several functions, including calcium-dependent protein binding activity; cytoskeletal protein binding activity; and protein homodimerization activity. Involved in cardiac muscle contraction; regulation of muscle contraction; and ventricular cardiac muscle tissue morphogenesis. Part of cardiac Troponin complex. Implicated in dilated cardiomyopathy 1Z; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 13.

NR:

description
troponin C, slow skeletal and cardiac muscles

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017176 True 504 mRNA 0.45 4 49481225 49482420

Neighbor

gene id symbol gene type direction distance location
AMCG00017172 NA coding upstream 65263 49404227 ~ 49415962 (+)
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding upstream 83313 49384611 ~ 49397912 (+)
AMCG00017166 NA coding upstream 112386 49360827 ~ 49368839 (+)
AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding upstream 202539 49265461 ~ 49278686 (+)
AMCG00017164 NA coding upstream 228538 49237902 ~ 49252687 (+)
AMCG00017181 NA coding downstream 195744 49678164 ~ 49697848 (+)
AMCG00017182 LOC105893506,LOC108431510 coding downstream 225115 49707535 ~ 49709079 (+)
AMCG00017184 NA coding downstream 266423 49748843 ~ 49765192 (+)
AMCG00017185 NA coding downstream 286540 49768960 ~ 49780898 (+)
AMCG00017188 NA coding downstream 308459 49790879 ~ 49796155 (+)
G18791 NA non-coding upstream 269969 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1154420 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 1416207 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 1626567 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 2001969 47478978 ~ 47479256 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 99844 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 190665 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 671938 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 673033 50155453 ~ 50155825 (+)
G19058 NA non-coding downstream 850046 50332466 ~ 50333366 (+)
AMCG00017173 NA other upstream 77380 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 99007 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4519624 44949034 ~ 44961601 (+)
G18192 NA other upstream 4825127 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5343294 44126214 ~ 44137931 (+)
AMCG00017183 NA other downstream 231047 49713467 ~ 49727567 (+)
G19113 NA other downstream 1069460 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 1077030 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3331833 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 3338641 52821061 ~ 52834042 (+)

Expression


Co-expression Network