AMCG00017181


Basic Information

Item Value
gene id AMCG00017181
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49678164 ~ 49697848 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017181
ACTACTAGATGAGGAATTTCAAAGCCTGTGTCCAGGGGAGAAGCCCCTTTAACAGGCAGGCAGGGCGGGGACGTGTCTCATATTACCTCGATCCCCAGACCTCCGGTGGAACAGAGCGATTGCTCCTCAAATCAGCCATGGCGACAATTGCaagggtttttattttcttcttaattgGAATTTACACTGCAGTCGATTCTTTCGATTGTGTGTCATACCGTGACTACTACGGAAAGAGCATGGGGTCTTCTTTTAGCATCGCTATTAGTATAATCCCCATCTTTGTcttaatcatcatcatcgtctCTTGCTGCACGTGTCCCTGCTGCTGCCTGTacaaaatgtgcagaaaacCTCAAAGACCGATCGTTACCAGCACAACGACCACCACAGTGATGCAGGTCCCGTACCCACAGCAGCCCGTGGGTCCTCAGTCCTACCAAGGAGCGCAGTATCCAGGATACCAGCCAGTGCCAGTCCAGCCGGGATATGGAGGCCAGCCCATGCCAACAGCACCCTACCTGGGACAGCAGTACGCCCCCACCTACCCAGGGCAGGCATTAGGGCCACCCCCTTCCTACCAAGAGGTAGTGCCGGGTGGTACCGGGGCTCCTGCCTATCCACCCGGCCCGCCCTCCTACAACCCGGCCCACCCTCCCGCAACAGCGGCCTACACCTCCGGACAGCCTGCTTACCCCATGCAGCCTCCCCCGCAGCCCGGCTACCCCCCCCAGCAGGGCTACCCCCACCAGCCTGACAGCAGCTCCGCCCAGCCCGCCTACAACCCTGCATATGTGGAGCCACTAAAGTCAGGATACTGAAGGGGACGTTACAATTGTaaccaacaaacacattaacGCTCTGCGACAGCTTTGCCTGTCACCGCTGGAATACACTGGCACAAACAATGACTGTTAAACGGGGATGTCCTGGGCAGGTTTTATTAACGTGGTCTTGTCTTCACAAGGTTTTTCTTAAGGTTCTATCTTCTTTAAAAGAATGTCTCtactatatttaaatactttttgcttattgtttatttttgtttttgattaaagttttcacattttccactgTAGCATGTTTCAGTTAATATTTCTATAGTAGATATATAAAATCTCATTATAATACTAGAAAGGCGTACATTCCACATGTTTCCAATTAAACTGTTAGTGCAGTCTAATCATTAGGGTCGAATACCTGGAAGTGCAACTCTTGGGAATATTTCACGTTCAAGTCTCAAAGACACTGTTAATAAAAGTCCTCagaaaatagtgttttttttttttaatgcattatgaCCAATGCAAAGTATCAGGGGTTGGCTTTCACTGAAAGTCCAATTAAACatgtgaaaagagaaaatgtctTACAAGCCGGTGCTACGTCGCTTAATTTCATAGTATATTTGTTGTGCCGTTCGCATGTCTGTCAGTTGCCAGTACTACCTACTGGACAATAACTGAACTGCAGAGCTTGTGTATAAAGTTCCAATATGCCTTTTACAGGaatgtttctccttttttctgtCGACTCTCAGGTTTTTTTGcaataaactgaataaataaatgctaaattcGTGGTTTTATACTTTACCTTTTAGgttcttgttattttaataaaaataaataggattTGCCTTGTCGTTCATATCAGTGACGTACCAAACCTTCAGGGAACATCAACCAAAAACacctttaacaaataaaaaccacaTCCATGGTGTATGTAGCAGATCCACAATGTGCCATGAAAGATAGATTTCAGTCTTTCCATGCAGTGGCTTCTAGTTCGGtttgttatgttacagtcaCTACTTTATCATGTATGGTCAAGTTTTAGAGATGCCTTAAAAATATAGAGGTTGTTTCCCACCCCCCTCTAATGTCCTTTTTCCTGATCCCATACAATAGACTGTTCAGTACAAAGTGTCACTTTTACTTTTAGAAAGCGAATTTAACACGATCgtccttttcctgtttttaataacctgtgtttaaattgtatttagaCATGAAAC

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0016477 cell migration biological_process
GO:0009605 response to external stimulus biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0070887 cellular response to chemical stimulus biological_process
GO:0040011 locomotion biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0042330 taxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04611 Platelet activation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017181 True 2020 mRNA 0.44 5 49678164 49697848

Neighbor

gene id symbol gene type direction distance location
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding upstream 195744 49481225 ~ 49482420 (+)
AMCG00017172 NA coding upstream 262202 49404227 ~ 49415962 (+)
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding upstream 280252 49384611 ~ 49397912 (+)
AMCG00017166 NA coding upstream 309325 49360827 ~ 49368839 (+)
AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding upstream 399478 49265461 ~ 49278686 (+)
AMCG00017182 LOC105893506,LOC108431510 coding downstream 9687 49707535 ~ 49709079 (+)
AMCG00017184 NA coding downstream 50995 49748843 ~ 49765192 (+)
AMCG00017185 NA coding downstream 71112 49768960 ~ 49780898 (+)
AMCG00017188 NA coding downstream 93031 49790879 ~ 49796155 (+)
AMCG00017189 NA coding downstream 107979 49805827 ~ 49811967 (+)
G18909 NA non-coding upstream 4238 49673085 ~ 49673926 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding upstream 7875 49582264 ~ 49670289 (+)
G18865 NA non-coding upstream 184815 49436264 ~ 49493349 (+)
G18791 NA non-coding upstream 466908 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1351359 48322263 ~ 48326805 (+)
G19040 NA non-coding downstream 456510 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 457605 50155453 ~ 50155825 (+)
G19058 NA non-coding downstream 634618 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 635912 50333760 ~ 50334506 (+)
G19061 NA non-coding downstream 643569 50341417 ~ 50342150 (+)
AMCG00017173 NA other upstream 274319 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 295946 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4716563 44949034 ~ 44961601 (+)
G18192 NA other upstream 5022066 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5540233 44126214 ~ 44137931 (+)
AMCG00017183 NA other downstream 15619 49713467 ~ 49727567 (+)
G19113 NA other downstream 854032 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 861602 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3116405 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 3123213 52821061 ~ 52834042 (+)

Expression


Co-expression Network