AMCG00017182 (LOC105893506,LOC108431510)


Basic Information

Item Value
gene id AMCG00017182
gene name LOC105893506,LOC108431510
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49707535 ~ 49709079 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017182
CGGGCCTGTTTGTGTACGTGCAACTGATACATTCCGCCCGGTGACGTCACGGCGGCGGcgcgctgtgattggctgccgGGGGCCTGACGAGAGGGATGTTTACCAGCTGAGCGAGCAGGCTGCTCGGGCTCTGACACAGCCTGGCTTTCTCTGCGGGACTGGCGCTCACACAGGACGGCGCTCGGAAATATCGCCAAAATCACCCGAATCTCACCCTGAGCTTTTTCGGAGAGGTGAAAAGACGGCTCGTATTTGTTTTTCAGCGTCTAATGAGAAAGTTACCGAGTCGCTACAATGAGAACGGAGATCTCGACAGCTGCCAGCTTCATCACCAGGCTGCTGAGGACGACCGGGCTCCTGTCCGAGGAGCAGCTGCACCAGTTCGGCGCGTCCCTGGAGCAGTCCCTGGGAGAGCACTACAAACATCACTGGTTCCCACAGGCGCCCTGTAGAGGCTCTGGGTACCGATGCATCAGGATCAACCACAAAATGGACCCCTTGATCGGCAAAGCCGCCAGCACCATCGGACTCCATCGGGAGCAGCTGTTCACGCTGCTGCCCAGTGAACTCACCATGTGGGTCGACCCATATGAAGTGTCCTATCGGATAGGCGAGGACGGCTCCATCTGCGTCCTGTACGAGTCGACGCCCCCGCCGCCGATGCCCGCCAGCTCGGTGGACAGCCGGATCAGCTGCAAGGACGAACTGCGGATCGGCCGGTCGAGCCCCTCGAAAAGTTTCAACATGATGACCGTGTCAAGCTAACAGTGTTCCCCCCACAGCTGTCCCTGTACAGTGCTGTATGTATTGTGTCCTCATCTGATGATGTAATTGTTTACCCGTTTCTTTAGACATTAAAAGATTTTAGAAATACTGCCAAAACCCTTTGTTTATTGTGGTCAAGGgctattgtaaaaataaaatccaaaacaaacatgcataagAGCAACAATGTAATTTTACGGGATTGTATACTGTAAATGACATGTACAGTCACGTGGTGAAATGTTTTACAGATTTCTATTTTAAAGAAGCCTTGGGTATTTGTAATAAAACTCCCATATTTGAGTA

Function

NR:

description
PREDICTED: protein BTG1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017182 True 1071 mRNA 0.52 3 49707535 49709079

Neighbor

gene id symbol gene type direction distance location
AMCG00017181 NA coding upstream 9687 49678164 ~ 49697848 (+)
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding upstream 225115 49481225 ~ 49482420 (+)
AMCG00017172 NA coding upstream 291573 49404227 ~ 49415962 (+)
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding upstream 309623 49384611 ~ 49397912 (+)
AMCG00017166 NA coding upstream 338696 49360827 ~ 49368839 (+)
AMCG00017184 NA coding downstream 39764 49748843 ~ 49765192 (+)
AMCG00017185 NA coding downstream 59881 49768960 ~ 49780898 (+)
AMCG00017188 NA coding downstream 81800 49790879 ~ 49796155 (+)
AMCG00017189 NA coding downstream 96748 49805827 ~ 49811967 (+)
AMCG00017190 NA coding downstream 112654 49821733 ~ 49831079 (+)
G18909 NA non-coding upstream 33609 49673085 ~ 49673926 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding upstream 37246 49582264 ~ 49670289 (+)
G18865 NA non-coding upstream 214186 49436264 ~ 49493349 (+)
G18791 NA non-coding upstream 496279 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1380730 48322263 ~ 48326805 (+)
G19040 NA non-coding downstream 445279 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 446374 50155453 ~ 50155825 (+)
G19058 NA non-coding downstream 623387 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 624681 50333760 ~ 50334506 (+)
G19061 NA non-coding downstream 632338 50341417 ~ 50342150 (+)
AMCG00017173 NA other upstream 303690 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 325317 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4745934 44949034 ~ 44961601 (+)
G18192 NA other upstream 5051437 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5569604 44126214 ~ 44137931 (+)
AMCG00017183 NA other downstream 4388 49713467 ~ 49727567 (+)
G19113 NA other downstream 842801 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 850371 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3105174 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 3111982 52821061 ~ 52834042 (+)

Expression


Co-expression Network