AMCG00017183


Basic Information

Item Value
gene id AMCG00017183
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49713467 ~ 49727567 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017183
GGATATCCGGGAGCAAAGCGGTAGTGCTACCAGTAGAGAGTTGtcggtgtgtgtcagtgaaagAAATCATTTTGCGTCCATCTGTGTGTCTATGGTGTGCCGCAATTGTTTTGCGAAAGAACTTGAATTGCGATTCCTGTACGTTTTCCGGCAGCATCTGTGGCATGGAAGTAGATAAAATGGACGAGAACGAGTGGAAATATCACGGGGAGGGAAACAAGAGCCTAGTGGTGTCTCATGTCCAGcactCTCAGGTTCTAAGGTTTTTGAAGTACCCAGCAGAAGAAACCGAAAACCCGAATCAGacatcaGAAGAAGCTTTTCATCACATACTGAACATTGTGGACttcagtaaaaatgtaatgaagcCATTCCTTGGAGGAAAATATGTTCACCATGGAgaGGCTGTGAAACTACCTTTGGACTTTGTAAGACAGCTTTCTTTAAAGGTTCAGCAAGAAAGACCAGAATCCCGTTGTGACAAGGTAATGGACACTTTTAGTGGATATGCTTTGTGCCTGCCAAATCTAACCCAGCTCCCAGACTGCCATTTCAGTGAACACAGGCCACCACTTTGCATTGAGATAAAGCCCAAATGTGGATTTCTGCCATTTTCAAGGCACGTCACTAAAGAAGTGAAGCGCAAGGTGTGCCGCTTCTGTATGCATCAACACTTGAAGCTAGCCAATGGAAAATGGAAGAGGATGAGCAAGTACTGTCCTCTTGATCTATTCTCAGGgaaCAAGCAGAGAATGTATCTTGCAATAAAACACTTGCTGGAAGAGGCACAGAACAACTTAAAAATCTTTAAGAACGGTGAACCAATATACAGCTGTAAGGATGACAAAGACTGCCTTCAGGACTTGAATGAATTGGCTCAGCACTTGAAACCCTATTTCTTTCCTGCCAATGGTTTAATCAACGGCCATCAGTCCACAAAGGTGGTCATCAATGAACTGATCCAGGTGATCACCACAGTGCTGCTGAGCAGCTCAGACTCCTGCAGGACAGGGGACCTGAGGAAGGTGCTTTCCCCCGAGGGCCGGGGCCACTGCGAGGCCAGCCTACTGCATAGAGACGTGCTGCGCAAAGGTATTCCCTGCCTGCCCAAAGACTGCGTTCTCTCTAAAATACTACACGCTCAGATGCAGGACAGCCTAGACATCGAGGGACTCTATCCTCTGTACAAGCGGGTGGAGCAATACCTGGAGGAATTCCCCAAGGAGAGGAGCAGATTACAGATAGATGGGCCATACAACGAAAGTTTCCTCGAAAAACTGCGAAACTGTCCCTCTGAAGATGATGGGACGGTGGAATATGCTGTTGGCAAGGTCCACCAGTACAGAGTAGCGATGACGGCCAAAGACTGTTCGATAATGATTGCGCTCGCCCCGTGTGCGGACGACGAACCACTCGAGAACAGCGTGGAGATTCAACCGTCGAAGTCCAGGTTTATGTATTCAGTGTCCATCCTGGATCTGGACCCTAAACCCTACGAGAACATCCCCCATCAGTACAAGCTCGACACGAAAATAGTCAATTACTATCTCCGGAGCACACAGGCCAAACAGGACCCCGCCAGCGCCGGCCTCTTCCGGGACAGCGAGGACTGCACGCTGCTGTTCCACCCCGTGTGAACTCTGCAGGGGGCCGCGCGTTCTCTTGAAGCATTACATGAAGCCGGTTTATGGATGCCAGcaaggattttg
>TU23515
tgaaagAAATCATTTTGCGTCCATCTGTGTGTCTATGGTGTGCCGCAATTGTTTTGCGAAAGAACTTGAATTGCGATTCCTGTACGTTTTCCGGCAGCATCTGTGGCATGGAAGTAGATAAAATGGACGAGAACGAGTGGAAATATCACGGGGAGGGAAACAAGAGCCTAGTGGTGTCTCATGTCCAGcactCTCAGGTTCTAAGGTTTTTGAAGTACCCAGCAGAAGAAACCGAAAACCCGAATCAGacatcaGAAGAAGCTTTTCATCACATACTGAACATTGTGGACttcagtaaaaatgtaatgaagcCATTCCTTGGAGGAAAATATGTTCACCATGGAGTAAGACTTTTGTTACATATCTCTGGCATGTTACTCCTTTTGTTGACCGTGAAGTTTTGAAGAACAAAACCACAATGTGATGCCA

Function

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0016310 phosphorylation biological_process
GO:0005813 centrosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0035299 inositol pentakisphosphate 2-kinase activity molecular_function

KEGG:

id description
K10572 IPPK; inositol-pentakisphosphate 2-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017183 True 1709 mRNA 0.49 13 49713467 49727567
TU23515 False 429 TUCP 0.42 3 49713524 49721471

Neighbor

gene id symbol gene type direction distance location
AMCG00017182 LOC105893506,LOC108431510 coding upstream 4388 49707535 ~ 49709079 (+)
AMCG00017181 NA coding upstream 15619 49678164 ~ 49697848 (+)
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding upstream 231047 49481225 ~ 49482420 (+)
AMCG00017172 NA coding upstream 297505 49404227 ~ 49415962 (+)
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding upstream 315555 49384611 ~ 49397912 (+)
AMCG00017184 NA coding downstream 21276 49748843 ~ 49765192 (+)
AMCG00017185 NA coding downstream 41393 49768960 ~ 49780898 (+)
AMCG00017188 NA coding downstream 63312 49790879 ~ 49796155 (+)
AMCG00017189 NA coding downstream 78260 49805827 ~ 49811967 (+)
AMCG00017190 NA coding downstream 94166 49821733 ~ 49831079 (+)
G18909 NA non-coding upstream 39541 49673085 ~ 49673926 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding upstream 43178 49582264 ~ 49670289 (+)
G18865 NA non-coding upstream 220118 49436264 ~ 49493349 (+)
G18791 NA non-coding upstream 502211 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1386662 48322263 ~ 48326805 (+)
G19040 NA non-coding downstream 426791 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 427886 50155453 ~ 50155825 (+)
G19058 NA non-coding downstream 604899 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 606193 50333760 ~ 50334506 (+)
G19061 NA non-coding downstream 613850 50341417 ~ 50342150 (+)
AMCG00017173 NA other upstream 309622 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 331249 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4751866 44949034 ~ 44961601 (+)
G18192 NA other upstream 5057369 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5575536 44126214 ~ 44137931 (+)
G19113 NA other downstream 824313 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 831883 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3086686 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 3093494 52821061 ~ 52834042 (+)
G19683 NA other downstream 3608342 53335909 ~ 53339655 (+)

Expression


Co-expression Network