AMCG00017184


Basic Information

Item Value
gene id AMCG00017184
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49748843 ~ 49765192 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017184
CTGAAGCAGAGTAGACGTGCACTGTTGTCAAGCCCCTGGCAATCCCAGCAAACTTGGGGAGAGCGGAAATATTTGGCCTTGCAAACTGACTGCGAACCGCTGTGCTTGCAAGCTCTACAGAACATCGTCTCCGCTATGGATCCCCGGGTGATCCTTGCACTAATGCTGCTCATCGGCCTCGGCCTCACTCTGGCACACGATGGAAGAGGCCCCGCTGCGaagggaaagaagaaaagatcaGGACCAAAGAGAGGGAAACCCAGACAACTGAGGCAAAGGTCCTCCGACGCACTCGTCCGCCTCGGCAATGTCCCCGTCAGCCATGGAGACGACAGTGGGCCGATAATCATCCAGTCCTACAAAGGTGTGGATGAGTTTGAGTCGAACTACCACGTCCTACCAGGAAAGCATGGACAGTGCGTATACCATGGCATCACCATGTTCGATAAAGCGGTTTGGTCTCCCAAGCCCTGTATCACCTGCCTTTGCGCTAATGGGAATATTGCCTGTGATGAAATGAAGTGCCCCACTCTGTCGTGCCCGCTCAGTGTAAAGCCCCCAGGAGAATGCTGCCCCGTCTGCACAGATATCGAACCCAATGACCCAAGTGAACTGGGGCCCGGGCCGCCCCGCTCACAGGCCGAGATCGAGGAGCTGCtgaagaaggaggaagaggatcagcaggaggaagaagagagacTGCGGAAGAAGGATGAGGAGcgcaagaggaggaggaagcacAAGAAGCTGGAGGAGGAGCGGCAGAGACAGCTCATGGAGGAGCGCCGGCGCAAGGAAGAGGAGCTCCAGGAGAggatggaggaggaagaggaaaagcAGAGGGAGAAGCAGGAGGAAGAGCAAAAGCGACTGAGGGATGAACAGAAGaagcaggaggaggagcagaagaGACGAGAGGAAGAACAGGAGCGGCGCCGGGAAGAAGTCGCCGCTGCAGCGGAGGAGGACAAGAAGCGGCGGCTGCAGGAGGAGGGAAAGCAGGAGGAGGGCTGGTGgagccgagagagagagcgggagcgGGAGCTGGAGAGGACATGGGAAGAAGAGAcagaggaggagctggaggtggATGAAGATGAGCTGGAGGAGGAAGATTGGTTAAGAGGCGATGTCTTCCGAGTGCCACCCCAGCCCACCACGGCCGAGGGAAttacccccctccctcctccgtcTCCTGAAGGTCCTGTCCGCACCCTGCCAGCAGGCTGCGTCATCTCCGATGTCACACTGAGCTGCACCAACGCCAAGCTCACAAATATCCCCCCCCTGTCAGATCCAGAACTCAAAAGCCTGAGTCTTGAAGGGAATTTTATAACTACAATTCCAGCAGAAGCCTTCAATGGAATTCCTAACTTGGAGTGGATTGACcttggcaaaaacaaaatcacatccGCAGGCATAGATCCACAAGCATTTAAAATCCTAAAGCAGCTAACACGTCTCTATATGGATGGAAACCTTCTTGAGCAAATCCCTGCAGATCTTCCCCCCACTTTGGAAGAACTGAAAATCAATGAGAACAACCTGAAAGGCATCGAGGAAGAGAGTTTTCAAGATCTGAGCAATCTCATCACCCTCGAGCTGGAAGGAAATATGCTTAGTGAAGGGAATGTCAATCCCTTGGCCTTCAAACCACTAAAACAACTCTCCTACTTGAGGCTGGGTAGAAACTATTTCCGCACTATTCCTCAGGGGCTTCCTGCATCTATTGAGgaactttacattgaaaacaatgtcaTAGAAGAAATTTCGGAAACGGCATTCAATCATACCAGAAACCTAAACGTTATTGTGCTGAGACACAATAAAATAGATGAGTCCAGGATAGCCCCCCTGGCCTGGATTAACCATGAGAACCTGGAATCCATAGATCTCTCCCACAACAGGCTCTATCATGTGCCTTCATTTCTCCCCAAATCTCTGATCCACCTGGTCCTACTGGGAAATCAGATTGAGCGAATCCCTGGATATGTGTTTGCCCACATGGAGCCCGGCCTCGAGTACCTGTATCTCTCCTTCAACAAGCTGGACAGCGAAGGGATCGACCCAGTGTCCTTCTTTGGGGCCTACGACTCCCTGATAGAACTGTTTCTGGATCACAACCAGATGACCACGGTGCCCTGCGGGATCAACGAGATGAAATCGCTGCATTTCCTGAGACTGAATGACAACAAAATAAGGAATTTTGGCCTAGATGCTTTCTGTGATCCTGCAAACGATGAAGACTCAAATCTAGTCACACTGCGCCTGGAAAATAACTACATCGACAGCAGAAAAATTTCACCTATTGCCTTTACTTGTATCAGGTCTTATTCTAGTGTTGTTTTGAAGCCACAGAAGATTAAGTAGCATATTTGTCATGTTATGATTGTGTGGTccaaagaaagcaaaagaagCTCTACTGACTTACCAGACAACCACAACAACGACCACtgagagaaaacacacagagatcaGTTAATTCCACTTATACCTCTCCTTGCTTTCTGGAGAAAAAGTAGTCTTTGTAATCTGTTGTtccttttataataatttatttggagATATTTTCAGTGACATTTAATACAGTCAGCATGAAAAGGAAAGAAGGCTTTATATTTAAAGATGGATATTAAAATGGCTGTAGGTCATtaccattttttgttgttgggtCCTTTTAAAACCAATTACTGACAGATTTCTGACAGATTAGCTAAACATTTGTAAAGCCATAATGGACCAACTAGACTGAAAAAGTGgttcagaagaaacaaaatagataacagaattatttaaatttctAATTGTAGTCGGGAGTTTCAAGGTTCAACAGCGAGTCTAAATGGTCTGGATTTGGAATTAAAAGCATGCcgtaatatttatttatcaattctgaaacaaaattgAGAAACCAAATAATTAATAGACGTGTTTGgtcataagtaaataaatgtaaaaaaaacaactaaaaaaagtgccttgagagaaaaacacacacaatcatctCAATATTTACCCAGTTCTCAGCATTGCTTAATCGAATGACCAAATCATTATCTAATCTTCCtcttcaatatattttgttttacaacagtggaataataatgaaaagaaaacatctaaaAGGACTGATTAATGAATCATTTATTGATTAATGGTCATTTTAATAGGAAGGTGAAAGATTTTCCACAGCTACTAAaaacaggaataaataaataaatgaaactattAAGAGGCTGTGTGAAAATTGAAAGGTCCAGACCTCACTccacaaaacaacatcaaacgCATATCTGACCACAGTAAACCACAATTTATCTGGAAACTATTGccatacatttgtattcacattttgttttttaaacaaaatcaagacaCATGCATGTACCATCCTTACCCTTTAATAagaaagtattacaattttgtcaTGGTGCTATACTGCTACTTCCTGACAGCTGTGTCTTGAGATTACATTTGCGACATGTAAGGTGCACCAAGAAATAGTTGAGCAGAAAGTGGTCTCAGAGTACGAAGCTCTGTTGCCTGGGTTGGATTTTGTAGTTCAAGTTCGAtgcaagttttattttgtattaagttATTTATCAGGCATCTTTATTCAAGGTGACTTACACAGTTTAACATGCAATTACAGTCCAGTCATCTGGTCTCAACCCTACACAGAGTTGAAAGTAAACTGTAAGGCACAACACAAAGCAAATAACTAACAATAATTATACAAGGGTAGTGAGGCAGCATGAGATATCACCAGGAGCTACAGAAATAACACTAAAACTGCccaattaatgtaatattaaaaagaaagaaaacaaaaaatgtaccgTTTTTCCATCAGAATTGACAGAATTTATGTCCTTTAACCATAAATCGAGGATGAAACTATTTCTTTAAACAATATTGATCTTAATTACAAATCATgaacatttctaaaaaatattaatacaattattactagcattactattactattaatgtcagtgtatgtttttattggtACAGCCTGTTGTATTCTCTTATCAGTAATATGTATACTTACTAtacttctgtgtttgtgtgtataatttgtaCCACCTGTGCTTTGCTGGCCCAGATGTAAATGGAGGGGAGGGTGTGTTTTAacacaagtcttttttttttaataatttgcacattttcaaaaatatattttaaaaaata

Function

GO: NA

KEGG:

id description
K08119 ECM2; extracellular matrix protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017184 True 4195 mRNA 0.43 10 49748843 49765192

Neighbor

gene id symbol gene type direction distance location
AMCG00017182 LOC105893506,LOC108431510 coding upstream 39764 49707535 ~ 49709079 (+)
AMCG00017181 NA coding upstream 50995 49678164 ~ 49697848 (+)
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding upstream 266423 49481225 ~ 49482420 (+)
AMCG00017172 NA coding upstream 332881 49404227 ~ 49415962 (+)
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding upstream 350931 49384611 ~ 49397912 (+)
AMCG00017185 NA coding downstream 3768 49768960 ~ 49780898 (+)
AMCG00017188 NA coding downstream 25687 49790879 ~ 49796155 (+)
AMCG00017189 NA coding downstream 40635 49805827 ~ 49811967 (+)
AMCG00017190 NA coding downstream 56541 49821733 ~ 49831079 (+)
AMCG00017192 iars coding downstream 86106 49851298 ~ 49905581 (+)
G18909 NA non-coding upstream 74917 49673085 ~ 49673926 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding upstream 78554 49582264 ~ 49670289 (+)
G18865 NA non-coding upstream 255494 49436264 ~ 49493349 (+)
G18791 NA non-coding upstream 537587 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1422038 48322263 ~ 48326805 (+)
G19040 NA non-coding downstream 389166 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 390261 50155453 ~ 50155825 (+)
G19058 NA non-coding downstream 567274 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 568568 50333760 ~ 50334506 (+)
G19061 NA non-coding downstream 576225 50341417 ~ 50342150 (+)
AMCG00017183 NA other upstream 21276 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 344998 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 366625 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4787242 44949034 ~ 44961601 (+)
G18192 NA other upstream 5092745 44654652 ~ 44656098 (+)
G19113 NA other downstream 786688 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 794258 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3049061 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 3055869 52821061 ~ 52834042 (+)
G19683 NA other downstream 3570717 53335909 ~ 53339655 (+)

Expression


Co-expression Network