AMCG00017185


Basic Information

Item Value
gene id AMCG00017185
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49768960 ~ 49780898 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017185
atgtGGAGCAAGGTAGGGGTCGGTGACGGCTGTTCGAGAGACCTACGCTTCACCATGAGGGAGAttctcctgctctccctcttGGCACTGTGCTCTGCCAAATACATCCAACCATTGAAGTTCTTGGACCTGCTGAAGATGCATGACATCATGATGCAGGACGAAGGAGAGGATGATGATGACAACAACTTCCTGTTTCCCACCAGGAAGACCAGAGCAGTGACTCCCTCAGGATTCCCCTACTCTACCTGCCCCTTCGGCTGCCAGTGCACGCTCAGGGTGGTGCAGTGCTCAGATCTAGGTTTGACATCAGTGCCAAAAGACATCCCTACTGATACATTAATGATTGAcctccaaaacaacaaaatcactgAGATCAAGGAGAATGACTTCAAGGGCATGAATAAATTATACGCACTGTTTCTGATTAATAACAAGATATCCAAGGTCCATCCCAAGGCGTTCCGCAGCATGACCAAACTGCAGCTCCTCTACCTCTCGCACAACCTGCTGACGCAAATCCCGGACAACATGCCAAAAAACGTCCTGGAGCTGAGGATCCATGATAACAAGATAAGGAAAGTCCAAAAGGAGGCTTTCAAAGGGATGAGATCCTTGCACGTTCTAGAAATGAGTGCAAACCCTATCGAAAACAAAGGCATTGAACTTGGGGCTTTCGAAGGCATGTCTGTCCTGTTTTTACGAATTGCAGAAGCAAGACTCACGGCCGTTCCTAAAGATCTCCCCTCTTCATTATATGAGCTTCACTTGGATTACAACAAGATTGGGAAAGTGGAAGTGGAAGATTTTATAcgatacagaaatgtgcagagGCTGGGGCTTggatataatcaaattaaaacagtggAGAATGGAAGTTTAGCTAATCTTCCTAATATCAGAGAACTGCACTTGGACAACAACAAACTCAGAAAGGTGGTGTATCTTCACGCCAACAATATCTCAAGTGTGGGCGTCAATGACTTCTGTCCCACGCGAACCAACGTGAAGAAGATCCCCTATTCTGGTATAAGCCTGTTTGCGAACGCTGTGAAATACTGGGAGGTGCAGCCGGCCACTTTCCGCTGTGTGTCCAACCGGATGGGAGTTCAGCTGGGCAACTTCAGGAGGAGGAAGTGAAAGCCTGCTGGCTCGAATGTCTAAAATGTTAAAGGTGGAATAGAGCATTGAAACTGAGGAGGAGGCATTACTTGAAATTATAGTTAGttaatcaataattaaacaaagacaTGAAAAAATCAGCAGGTGCTACAAGTTTAAATCTGCAGTGCAGACAGTGTTTAAAGAACAATAATGATATACCTGTTTAAGGAATACGTGGATGCCTTTCATTTTGACACCCACATTGTTCAATGCCAAAAGCATTCTTTGTAATGTAAAAGGTATCAGAcaatggcatttatttttacatccaGCTGTTTCAAGAGTAAATTATACATAgtctaagaaatcaaaatataatcCTCTTTGTAGTGGAAACATTATTTCCCTTTATTCATCAAAGCACTTTGGACCTAAAAACAAATGAGACGCTGGACAAACTTTAGATTTTGAATGTCCTATTGGCTAGACATTTCTTTTCTATGTACGTATGGCCACTTTGTAGCATTCTcattcaatttctttttttatttttctacaacaataatataaaatggtgGCCTAAACATGGGATTTCCATGGTCTGTATGTACTAGTCTATACTAGGATtgattagaaatgttatttaactttaaacagTGACTCATATGTGGTTAAAATGATGAAGAATAAGAACAAACTTTTTGAAGCTAAACTTTAACTTTGAAACTGTTGTCTGAAGCTGAATAATTCCAGCTTCTACTGTAGCCTTTTATAATTTCTCTTGTTGGTTAAACAGAGACGAACTCAAACCCAAAATGGCACACTTTATTACATGAAATTCCCAGGTGGAAAGGATACAGAGGTGTGggtttacacacacaaacacactactATTAAGACCTTATAGAATCAATGCACTTGATGCTGGTTCTTAACATATTTCACTCAGTTTCAAGAACAAAAATCCACTCTTTCAGTATAAATCCAAAAGCAATTCCACAGCCCTCCCTGTTGgtgaggatttaaaaaatacataaaataaattatgaactTTTTCTCCGACCACAAAGTGTACAGATTATGACCTAATCTATATACCAGAGGAAATAATCcagcaattgttatttttaaggcTCTTATTCttgaacattaaaataactgaacatttaCGTACAGACAGTAGTACTTCTCTGTAacgttttaaattattaatgttttaaaagttagATGCTTTCCTTGCAAATCACGTTTCCATCATAAATTTATTAATACACTTATTTAACATAATTCTGTATTTCAGTCCCACAAACACTAGAACAATGAACTGCTgagtttaacaaaaaaacaaacttaactTGACAGAGTTGACAGAAGTCTTTGCCACCACTATCACAAGACTTATAATTTTAAGTAGCcgagttttgttttaaaggagaattttcattttgcatgctTAAGTTATATAACATGTACCTAAGGATTTTCTGTTCCCCTTTAGTTTTATAAGCTTTGGTTTATGGTGCTTGATTTTGAGCTGATTACATcaaggaaatgttttgaagtaccctattattttaacattttccactGTATGTATCACATACTGAAAAAGATGACTGTATATTTACTATTCAGTTCGAATAAACAGTACAGTTTACAAGTCACAGTTTTTCTGCTgattttatacaggtaatggaAAACTGGAACAAATGAACTGAAGTCTGTAGGTAAAAATCAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0005518 collagen binding molecular_function

KEGG:

id description
K08120 ASPN; asporin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017185 True 2842 mRNA 0.38 8 49768960 49780898

Neighbor

gene id symbol gene type direction distance location
AMCG00017184 NA coding upstream 3768 49748843 ~ 49765192 (+)
AMCG00017182 LOC105893506,LOC108431510 coding upstream 59881 49707535 ~ 49709079 (+)
AMCG00017181 NA coding upstream 71112 49678164 ~ 49697848 (+)
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding upstream 286540 49481225 ~ 49482420 (+)
AMCG00017172 NA coding upstream 352998 49404227 ~ 49415962 (+)
AMCG00017188 NA coding downstream 9981 49790879 ~ 49796155 (+)
AMCG00017189 NA coding downstream 24929 49805827 ~ 49811967 (+)
AMCG00017190 NA coding downstream 40835 49821733 ~ 49831079 (+)
AMCG00017192 iars coding downstream 70400 49851298 ~ 49905581 (+)
AMCG00017195 LOC107697566 coding downstream 212464 49993362 ~ 49997451 (+)
G18909 NA non-coding upstream 95034 49673085 ~ 49673926 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding upstream 98671 49582264 ~ 49670289 (+)
G18865 NA non-coding upstream 275611 49436264 ~ 49493349 (+)
G18791 NA non-coding upstream 557704 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1442155 48322263 ~ 48326805 (+)
G19040 NA non-coding downstream 373460 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 374555 50155453 ~ 50155825 (+)
G19058 NA non-coding downstream 551568 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 552862 50333760 ~ 50334506 (+)
G19061 NA non-coding downstream 560519 50341417 ~ 50342150 (+)
AMCG00017183 NA other upstream 41393 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 365115 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 386742 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4807359 44949034 ~ 44961601 (+)
G18192 NA other upstream 5112862 44654652 ~ 44656098 (+)
G19113 NA other downstream 770982 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 778552 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3033355 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 3040163 52821061 ~ 52834042 (+)
G19683 NA other downstream 3555011 53335909 ~ 53339655 (+)

Expression


Co-expression Network