AMCG00017192 (iars)


Basic Information

Item Value
gene id AMCG00017192
gene name iars
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49851298 ~ 49905581 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017192
CAGACACCGGTAACAAGTGCTGCTTCTGCTGACAAGCATAAAAGATGGTTGTACCAGTTCCAGAATCCATTCATTTCCCCACTGAAGAGAGACGGATTCTTCAGCTGTGGGATGAGAAGGATTGTTTTCAGGAATGTCTTAAACAGTCCAAGGGCCGGCCCAAGTACACTTTCTACGATGGGCCGCCATTTGCCACAGGGCTTCCGCATTACGGGCACATCTTAGCTGGGACCATTAAGGACATTGTGACCAGGTTTGCTCATCAGAGTGGATTTCATGTGGATAGACGGTTTGGATGGGATTGTCATGGACTGCCGGTGGAATACGAAATAGATAAAACACTTGGAATTAAGGGACCAGAGGATGTTGCGAAGATGGGAATCGCCGAATACAATAGGCAGTGTCGAAGTATTGTGATGCGATACTCAAATGACTGGGAATTGACTATAAAGAGAATGGGTCGATGGATCGATTTCAAGAATGATTACAAGACTCTTTACCCCTGGTTCATGGAAACTGTTTGGTGGGTGTTCAGGCAGCTGTACGACAAAGGGCTGGTTTACAGAGGAGTGAAGGTCATGCCGTTTTCAACTGCGTGCAACACTCCCCTGTCCAACTTTGAGTCGCACCAGAATTACAAGGATGTGCAAGATCCTTCTGTGATGGTCAACTTTCCTCTGGAGGAAGATGaaagtgtgtgtttggttgCTTGGACAACCACCCCCTGGACACTGCCCAGTAATCTGGCCCTCTGTGTGAATCCGGAGTTCACGTATGTCAAATTGAAAGaccATGCTGCAGAAAAGGTCTACATCCTGATGGAAGCCAGAATAGCAGCTCTTTACAAATCCGAGAGTGAATACACTGTTCTTGATAAATTCCCTGGCAAGACTCTGAAAGGGAAGAAATATAAACCCCTGTTTGACTACTTCACAAAGTGCAAAGATGATGGTGCTTTCCGTGTAGTAATGGATAACTACGTTAGAGAGGAGGAGGGCACAGGTGTTGTCCATCAGGCCCCATATTTTGGAGCTGATGACTACAGGGTTTGCATGGATTACAAAATAATCCAGAAGGATTCTGTACCAATTTGTCCAGTGGATGCATCGGGCTGCTTTACCCCAGAAGTGAAAGACTTTGCAGGACAATATGTTAAGgATGCAGACAAACACATCATAAAGTTTCTGAAAGAGAATGGGCGCTTGGTTAGTTCTGGCACACACAACCACAACTATCCATTCTGCTGGAGATCAGATACCCCACTGATTTACAAAGCCGTGCCCAGCTGGTTTGTCAGAGTGGAACACATGGTGAACAAGCTGCTGGAGAACAACGACCAGTGCTACTGGGTCCCTGAGTTTGTGAGAGAGAAGCGCTTTGGTAACTGGCTGAAGGACGCCCGCGATTGGGCCATTTCCAGGAACCGATACTGGGGGACCCCTATTCCTCTCTGGGTCAGCGATGACTACGAAGAGGTGGTGTGTGTGGGGTCAATAGCGGAGCTGGAGGAACTGACAGGAACGAAAGTAACAGATCTTCATCGGGAGAGCATCGATCATCTGACCATTCCTTCGCGCTGTGGGAAGGGGGTCCTCCGGAGGGTGCAGGAGGTGTTTGACTGCTGGTTCGAGAGCGGGAGCATGCCCTATGCCCAAGTCCACTATCCCTTCGAGAACCGCCGGGAATTTGAGGACGCATTCCCAGCAGACTTCATTGCTGAGGGCATTGACCAGACTAGAGGATGGTTTTACACACTTCTAGTGTTGTCAACAGCACTCTTTGGTAAACCACCATTCAAGAACGTCATCGTAAATGGGCTGGTTCTGGcaagCGATGGACAGAAGATGAGTAAACGCAAGAAGAATTACCCAGATCCCGTTGAGATTGTGAAGAACTATGGAGCGGACGCTCTACGGCTGTACCTGATCAACTCCCCAGTGGTGCGTGCCGAGAACCTGCGGTTTAAAGAGGAGGGAGTGAGGGATGTGTTGAAGGATGTCTTCCTGCCCTGGTACAACGCCTATCGCTTCCTCGTGCAGAACGTTCAGAGATTACAAAAGgaagaGGAAATCCAGTTCCTCTACAATGAGAACACGGCCAAACCAAGTGACAATATCATGGATAAATGGATTCTGTCGTTCACGCAGTCACTCATCCTGTTCTTCAAGGCTGAGATGGAGGTTTACAGGCTGTACACTGTCGTTCCGAAGCTTGTCAAGTTTGTGGACATGCTGACCAATTGGTACGTCAGGATGAACCGCAGGCGGCTAAAGGGAGAGAATGGCACTGAAGACTGTGTGTGGGCCCTCGAGACCCTGTTTAGCGTCCTCTTCTCCATGTGCAGACTGATGGCCCCCTTCACTCCATTTATTACCGAGATGATGTATCAGAACCTGAGACACTTGATCGATCCCGCTGCGGTGGAGGAGAAGGACGCGGGGAGCATTCACTACCTCATGCTTCCTCAAGCCAGAGAGTCTGTGATTGATAAGCGCATCGAGAGCGCCGTGTCCCAGATGCAGTCTGTCATTGAGCTGGGTCGTGTCATCAGGGACAGGAAGACCCTTCCAGTGAAGtATCCTCTGAAAGAAGTGGTTGTTATACATCAGGACCCTGAAGCATTGAAAGACATCCAGTCCTTGCAAAAGTATATTCTGGAGGAGCTGAATGTTCGCCTGCTTACCCTCTCTACCGACAAAGACAAATACGGCATCAGGCTGAGGGCAGAGCCGGATCACATGGTGCTCGGCAAGCGTCTGAAGGGGGCCTTCAAATCTGTTACGGCTGCTATTAAGGAGCTAAAGAGTGAACAACTGGAGACTTTCCAGAAGACAGGATGCATTGTGGTCGAGGGACACGAGCTTCAAGAAGCAGATTTGCGTCTGATGTACACCTTTGACCAGGTCTCTGGAGCGGCCACACAATATGAAGCGCATTCAGATGCTCAGGTTTTGGTTCTCCTTGATGTCACTCCAGATCAGTCGATGGTGGATGAAGGTGTGGCCAGAGAAGTGATTAATCGCATTCAGAAGCTGCGCAAAAAGGGTCGCCTGGTGCCATCTGATGAGATTACTGTTTACTACAGTTGCACGCCGGCCACTGAATACTTGGACAAGGTTGTCCAGTCTCACACTGAATTCATACTTGCCACCATCAAGGCTCCTTTGAAAGCCTACCCTGTTCCCAAAAATGCCAGTGTCATTATCCAGGAGAAAACCCAGCTGAAGGGATCTGATCTGGAACTGACTATTGTGAAGGGAGCTTCGGCTGTTTGTGCTCCTCTCTCAGGACCAGCTTGTTCCTACATCAATTTAAAACTGAACTTCAACAACAAAGAGCAAGCTGGAGTGGTTCTTCTGGAGAATCCCAAGGGTGACAACCTTGTGGATTTGGAAAGACTGAAAGCCGTGTGCTCCAGTATCTTCGGCCTCCAGAGCCCACAGCTGGCTGTGTACGATGGCAAGACAGAGCTGAGCCGTAAGATGGACCTCCTGACTCTGAGTGGAAAGACCCTGCATGTTACCTCAGGAGCTGCCCCCACTGGAGCCCCCAGCTCTGAAGGCTTGTTCTGCCCCTACATCAACCTACAGCTGCTAAACACGAAGCCACAAGAGTGTCAGAAAGGGGAAGTGGGGACCCTGCTGTTGGCTAACCCAGTTGGACAGAACGGGCTGACCTATGGAGGGCTTCTGAATGAAACTGCCAAGGTGTTTGGCCTCAGAAGTCGGAGACTCAAACTGTATCTTGACGAGGCCCTCGACGAAGaGATCACAGAACAGACGTCAATGAAGACCCTGAACACGAAGACTGTGTACGTTAGAGTTTTACCCACAACGGCAGAATCATAACATTTtttaaggaattaaaaaaaaacacatatacagcCTTGCTTGCTTTTCCATTCTGAGAAGGTTTCCACTATTGAAGCCATTCTCTGTACAGGCACTGCAGTCTTCAGTCCGCAGTAATGTACCCTGAACGCGCCAGTCTGAATGGGTGTTATGGTCAGTGTTAGCCTCTCCGTGTCttcttaattttaatgtctctttctttccttgGCTAAGTCAGCGTATTGAATGGTTTGCAGTATGCAGATTTGGCACAATTGTTTTAGCTCTAGCAGTctatgcaataaataaaaggtgataaaatactttaacccctcccccctttcACAATCTTCCTttgagggattttattcccctgAAACTTAAGATAATGACATGTGCCCaaacatagaaaatgtattttgattccAGGAGTGTTCAAATCTATTGTGACAGTTTTCCATCGCTAAACCAATAGATCATTGATAACTGTCAAAAGATGAAATTTGAGGCATGAAAGAATCAATACCAGTGTGTGCTTTATTATGTGACCTCCATACATGTTCAATGAAAGAGTGTCTTGACTGAGtgatacaaagaaaatatgctGTACTGTCACACAATCAATTAATACAACCCATTCATCGTTGTCTGAGAGGTTCATGTGGGAGATCTGAtaccaaaaatgaaaaaaaatagccGCCTTTGCTTACAAGATTATATTCATGCCAagggtggtgtttttttttattcatctcGTGTGTGGGGTATTCCTCAATGGGCTCCCACTTTGGACTATAGATTAACAGGTAGGAGTAAGGATTATCAAGTGTAGCTTCTGCTGTACCTTTTTCATAGAAGACACGGTTTTGTAACTAAACAGGTGATTGGCTAAATAATGGACAACACATGGGGAAGACTTTGGTTTTTAAGGGG

Function

symbol description
iars Enables isoleucine-tRNA ligase activity. Involved in isoleucyl-tRNA aminoacylation. Part of aminoacyl-tRNA synthetase multienzyme complex. Is expressed in several structures, including alimentary system; nervous system; respiratory system; sensory organ; and urinary system. Orthologous to human IARS1 (isoleucyl-tRNA synthetase 1).

NR:

description
PREDICTED: isoleucine--tRNA ligase, cytoplasmic

GO:

id name namespace
GO:0006428 isoleucyl-tRNA aminoacylation biological_process
GO:0006450 regulation of translational fidelity biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004822 isoleucine-tRNA ligase activity molecular_function
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG:

id description
K01870 IARS, ileS; isoleucyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017192 True 4763 mRNA 0.47 34 49851298 49905581

Neighbor

gene id symbol gene type direction distance location
AMCG00017190 NA coding upstream 20219 49821733 ~ 49831079 (+)
AMCG00017189 NA coding upstream 39331 49805827 ~ 49811967 (+)
AMCG00017188 NA coding upstream 55143 49790879 ~ 49796155 (+)
AMCG00017185 NA coding upstream 70400 49768960 ~ 49780898 (+)
AMCG00017184 NA coding upstream 86106 49748843 ~ 49765192 (+)
AMCG00017195 LOC107697566 coding downstream 87781 49993362 ~ 49997451 (+)
AMCG00017194 atp2b2,LOC107561799 coding downstream 106351 50011932 ~ 50031382 (+)
AMCG00017193 atp2b2 coding downstream 139637 50045218 ~ 50061365 (+)
AMCG00017196 slc6a1,slc6a1b,LOC107746710,LOC107670967 coding downstream 272874 50178455 ~ 50190780 (+)
AMCG00017197 NA coding downstream 360078 50265659 ~ 50267149 (+)
G18909 NA non-coding upstream 177372 49673085 ~ 49673926 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding upstream 181009 49582264 ~ 49670289 (+)
G18865 NA non-coding upstream 357949 49436264 ~ 49493349 (+)
G18791 NA non-coding upstream 640042 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1524493 48322263 ~ 48326805 (+)
G19040 NA non-coding downstream 248777 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 249872 50155453 ~ 50155825 (+)
G19058 NA non-coding downstream 426885 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 428179 50333760 ~ 50334506 (+)
G19061 NA non-coding downstream 435836 50341417 ~ 50342150 (+)
AMCG00017183 NA other upstream 123731 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 447453 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 469080 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4889697 44949034 ~ 44961601 (+)
G18192 NA other upstream 5195200 44654652 ~ 44656098 (+)
G19113 NA other downstream 646299 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 653869 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 2908672 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 2915480 52821061 ~ 52834042 (+)
G19683 NA other downstream 3430328 53335909 ~ 53339655 (+)

Expression


Co-expression Network