AMCG00017197


Basic Information

Item Value
gene id AMCG00017197
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50265659 ~ 50267149 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017197
ATGAATCTCCTGGTACTGTATGCTGTTAAGAAGGAGAGAACGCTGCACACTGTGGGGAATCTGTATATTGTGAGCTTATCTGTGGCAGATCTCATCGTTGGTGCTACTGTGATGCCTCTTAACATTGTCTACCTGTTGGAGAAGGAGTGGAGACTGGGACAAATGGTTTGTCAGTTTTGGTTGGTTATGGACTATGTGGCCAGCACAGCATCCATCTTTAGCCTCTTCATTTTGTGTGTGGATCGCTATCGCTCTGTGCGGCAACCGCTTCGGTACCTAAAGTATCGGACCAGAGCCAGAGCGAGCGTCATGATCTCAGGAGCCTGGCTTCTGTCCATGATGTGGGTCATACCTATCCTTGGCTGGCGGACCTTTTCTGATGTGGATCCAAAGCCCGAGTCTGAAAACAAGTGTGACACTGATTTTCGATTTGTGACCTGGTTCAAAGTCCTCACTGCAGTCCTCAATTTTTATGTCCCCTCTGCCTTCATGCTCTGGTTTTATGCACGGATATATATGGCAGTGAGGAAGCATTATCAGCAACGTGAGTGCATCAATGAGGCAGTCCAACCTTctgacagaaatgttttttcccaaaatggaaaaatatcaGGAAAGAGGCACAAGACTGACAAGGTCCGTCAGGAGGATAGTGCTCCCTCTGAATATCCCCATGTTGATGGCTTGTTGGATCAGTACAGCTTAGGCCAGGCTTACTGCCCCAACGATATAAGTGAAGGACTTGGCTCAGATATCTGGGGTGAGAAACAAACACGTACATGCTGCTACCAAGCGTCCCTGTTCACTATTCCAAAACGTCAGAAGCACTCCCCACGAGACATCTTCTTGACAAGTACAGAAGGACACCCACTTGCCTCCCAAGGCACACAAGATGCCGCAAGAGAGATGGACTCTTCCATAGGTCTTAAAACGTCTTTGAAGTTGACATGCCTGCCTCTAAGCATTCTGCAACCGGATAATGGTGATGTCAAGACCATGTTTGTGTCGGTTAATGACTGCAACTTGATTGTGCCAAACTCTGTTGCTGGTGTGTGCGAGATAACGGACATCTCCGATGTTCAGAAATTTGCCACGGTTATGTGTAAAGATGAGTTCCCAAATCCTTCGCCCTCCTCGTGGCTTCACAGCACCAGTCCTAAAGGGGATTCAGCCAATGGGAACAACCTAAAACTGTCTTGGCAAAAGTTCTGCTCCCAGTCCAAGCAGTACGTTCAGAGTCTGCGTGTCAGAAAAGAGCGTAAAGCCGCAAAACAGCTGGGTTTCATCATCGCAGCCTTCATGGTGTGCTGGATCCCATACTTTGTGACCTTCATGGTAATGGCCTTCTGTAAGACTTGTATTCATCATGACCTTCACATGTTCACAATCTGGCTGGGCTACATCAACTCCACATTGAATCCTTTTATTTATCCCCTCTGCAAtgaaaattttaaaaagattttcaaGAAAATACTCCATATCAACTCCTGA

Function

GO: NA

KEGG:

id description
K04149 HRH1; histamine receptor H1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017197 True 1491 mRNA 0.47 1 50265659 50267149

Neighbor

gene id symbol gene type direction distance location
AMCG00017196 slc6a1,slc6a1b,LOC107746710,LOC107670967 coding upstream 74879 50178455 ~ 50190780 (+)
AMCG00017193 atp2b2 coding upstream 204294 50045218 ~ 50061365 (+)
AMCG00017194 atp2b2,LOC107561799 coding upstream 234277 50011932 ~ 50031382 (+)
AMCG00017195 LOC107697566 coding upstream 268208 49993362 ~ 49997451 (+)
AMCG00017192 iars coding upstream 360078 49851298 ~ 49905581 (+)
AMCG00017198 atg7,LOC107697561,LOC106907352,LOC106911936 coding downstream 4082 50271231 ~ 50303625 (+)
AMCG00017204 NA coding downstream 136170 50403319 ~ 50403624 (+)
AMCG00017201 syn2,LOC107088169,LOC106904985,LOC102235059,LOC103145103,LOC103467585 coding downstream 174398 50441547 ~ 50445797 (+)
AMCG00017202 syn2,LOC107742035,LOC107571222,LOC107667867 coding downstream 191814 50458963 ~ 50476755 (+)
AMCG00017205 NA coding downstream 233894 50501043 ~ 50513355 (+)
G19042 LOC103376870 non-coding upstream 109834 50155453 ~ 50155825 (+)
G19040 NA non-coding upstream 110965 50154358 ~ 50154694 (+)
G18909 NA non-coding upstream 591733 49673085 ~ 49673926 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding upstream 595370 49582264 ~ 49670289 (+)
G18865 NA non-coding upstream 772310 49436264 ~ 49493349 (+)
G19058 NA non-coding downstream 65317 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 66611 50333760 ~ 50334506 (+)
G19061 NA non-coding downstream 74268 50341417 ~ 50342150 (+)
G19062 NA non-coding downstream 84103 50351252 ~ 50351947 (+)
G19146 NA non-coding downstream 364229 50631378 ~ 50631634 (+)
AMCG00017183 NA other upstream 538092 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 861814 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 883441 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 5304058 44949034 ~ 44961601 (+)
G18192 NA other upstream 5609561 44654652 ~ 44656098 (+)
G19113 NA other downstream 284731 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 292301 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 2547104 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 2553912 52821061 ~ 52834042 (+)
G19683 NA other downstream 3068760 53335909 ~ 53339655 (+)

Expression


Co-expression Network