AMCG00017198 (atg7,LOC107697561,LOC106907352,LOC106911936)


Basic Information

Item Value
gene id AMCG00017198
gene name atg7,LOC107697561,LOC106907352,LOC106911936
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50271231 ~ 50303625 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017198
CTGGCTGGCCTGTATCCACGGACGCGTCTCTGCACATGTCTATGCCGGTCTAGTTCAGCTCGTTATGTGGCCCGACGTGAAAAACCACATCGCGCAAAGCATTGAGAATTTCGAAAGCTCATTCAGGGAGACGAGATTCCTGCATCGATGAACGCACAGATGCGGCACAACTCGTGTTTTATGAATCCCACAGGGATGCGCTCTGAACATAGCAAACGAGGAGAGCCGGTTGTAGCGAGTTGAGTCCTCTTCGCTGCTCCGCCTGGAAGTAACATTGTATCTTTAAACAGGAGAGGGAGGTAGACATTGTTAAGATGAAAAGGAACGGCGTGTATCAGTTTTTCTCGGTGTTTTCGTGCTTGGTTGTAtttctgttcttgttcttgttttggttttttgtgttttatacgATGGTGATGACAccgtaatttaaattaaagcatatgAGCATTGGATTTGGAGTGCAGTGGGTAGACTAAGTTAAACGAAGAAAAAGGACGCATATGTGTTGCAAGTAGCTATAGTCACTGTTCAAGCAGCTGTCTTGCGAAGATTTGGGTGTATTGCTGTTGTGAGCTCTGCACTGCGCTGCCCTGCCATGATTAAAACGCCTGACGTAACGACGTGCGTGCACTTGGATAACGCTCTACGTCTGACGTCACACGGTCAGGAGTTCTATCACGCATCCGAAGGAGGAAGTCAGCTCTTGTTGTAGAAGGGATAGAATCTGAACATGGCAACGGCTGCAGAGTCCACAGAGAAAGGCACCATAGCTCCAGGCGACAATCCCAAGCTGCAGTTCGCGCCTTTTAGCAGCGCCTTGGAAGCCGGTTTCTGGCATGAACTCACtcagaaaaaaatcaatgacTACCGGCTGGATGAAAGTCCGAAAAGTATCAAAGGCTATTATTATAATGGTGATCCTGTTGGACTTCCTACTCGTTTAACCTTGGAGTTCAGTGCATTTGATGTGGATGGCCCAACTCCAGCACGGTGCTGCCCTGTGGTCGGGACTCTTTACAACACAAACACCCTGGAAGCCTTTAAATCATGTGATAAGAAAGAACTGATGGAAAAAGGAGCTAAGGAGGTAAGAGGATTAACTAGccaaaaaattCAAGCCTTGCAAAAAGCATATGACACCCTTTGCCAGGAGAACGGGGTGACGGCGCTTCCGTATTTTCTCGTGAAGTATACAGAAGACTCTGTTTCGGTGTGTTCACTTGGGAAATGGGACGACTTCTTCAAAGGCCAAAAGAAGGTCACGATTGGTGTCTATGATCCCTGCACTCTATCGCAGCATCCTGGATGGCCTTTGAGGAATATTCTCGTCCTTGTCGCCAGCAAATGGGGTGCTCTCTTGGATTCAGTCGAGGTCCTGTGCTTCAGGGACAGGACCTTGCAGGGCACAAGGTCCATTCAGCACAGCATCATCTTCGAAGTGAAGCTCCCAGCGATCTCCGCAAGTTCAGgatgcCCGAAAAGTGTCGGTTGGGAGAAAAACCAAAAGGGAGCCATGGCACCCAGGATGGTGAATCTCAGTGAATGCATGGATCCTAAAAGGCTGGCCGAGTCCTCAGTGGATCTGAACTTGAAGTTGATGCGTTGGAGACTGGTTCCCTCTCTTGACCTGGAGAAAGTGGTTTCTACAAAGTGTCTTTTACTTGGGGCAGGAACCCTGGGCTGTAATGTGGCAAGAACTTTAATGGGCTGGGGTGTGAGGCACATCACATTTGTGGACAATGCCAAGATCTCCTACTCAAATCCCGTTAGGCAGCCGCTGTATGAATTTGAAGACTGTCTGAATGGGGGGAAGTCCAAAGCTCTCGCAGCAGTGGAACGGCTCGGGAAAATTTTCCCAGGAGTGAACGCGGAGGGCTACAACATGAGCATCCCCATGCCCGGGCACCCGGTGAACTTCTCCGAGGTGACGATGGATCAAGCGCGCAAAGACGTGGAGCAGCTGCAGAGACTCATCTCCGCGCACGATGTGGTTTTCCTGCTCATGGACACGCGCGAGAGCCGCTGGCTGCCCACGGTCATCGCCGCCAGCCAGAGGAAGCTCATCGTCAATGCTGCTCTCGGGTTTGATACGTTTGTTGTCATGAGGCATGGCCTGAAGAAACCCAAGGAGGCTGAGGGGCCAGAGTTGGCCCCCACCATCTCCTGCACCCCCGGCGGCTCGGGGGCCATCCCCGGGAGCTCGCTGTTCTCCAACATCCCCGGACACCGGCTCGGCTGCTACTTCTGCAATGATGTCGTGGCACCCGGAGATTCAACAAGGGACCGCACTTTGGACCAGCAGTGCACTGTGAGCCGCCCAGGTCTAGCCATGATAGCAGGAGCTCTGGCGGTGGAGTTAATGGTGTCAATATTACAGCACCCAGAGGGAGGTTATGCAGTCGCCAGCAGCAGCGATGACAGGATGAATGAACCTCCAACCTCCCTTGGTCTCGTTCCCCATCAGATCCGTGGATTTTTATCAAGGTTTGACAATGTCCTTCCGGCGAGCCTGGCTTTTGACAAATGCACGGCGTGTTCCTCTGTAGTTCTCGATCACTATGAACGAGAAGGGTTTCTGTTCTTGGCCAAAGTCTTCAACTCCTCCCACTCGTTCCTGGAGGACCTCACTGGACTGACGCTGCTCCACCAGGAGACTCAAGCAGCGGAGGTAGGAACTGTCTCAGTGACCCCTGACCTCAGTCTGTCAAAGCTACTTTCAGGAGCAGGTGCTGTTTTGCAGGGCATCACCAAATGTCAGTATGTGACCCAATGA

Function

symbol description
atg7 Predicted to enable ubiquitin-like modifier activating enzyme activity. Acts upstream of or within autophagosome assembly; heart development; and mitophagy. Predicted to be located in cytoplasm. Is expressed in brain; liver; male organism; and muscle. Orthologous to human ATG7 (autophagy related 7).

NR:

description
PREDICTED: ubiquitin-like modifier-activating enzyme ATG7 isoform X1

GO: NA

KEGG:

id description
K08337 ATG7; ubiquitin-like modifier-activating enzyme ATG7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017198 True 2776 mRNA 0.51 17 50271231 50303625

Neighbor

gene id symbol gene type direction distance location
AMCG00017197 NA coding upstream 4082 50265659 ~ 50267149 (+)
AMCG00017196 slc6a1,slc6a1b,LOC107746710,LOC107670967 coding upstream 80451 50178455 ~ 50190780 (+)
AMCG00017193 atp2b2 coding upstream 209866 50045218 ~ 50061365 (+)
AMCG00017194 atp2b2,LOC107561799 coding upstream 239849 50011932 ~ 50031382 (+)
AMCG00017195 LOC107697566 coding upstream 273780 49993362 ~ 49997451 (+)
AMCG00017204 NA coding downstream 99694 50403319 ~ 50403624 (+)
AMCG00017201 syn2,LOC107088169,LOC106904985,LOC102235059,LOC103145103,LOC103467585 coding downstream 137922 50441547 ~ 50445797 (+)
AMCG00017202 syn2,LOC107742035,LOC107571222,LOC107667867 coding downstream 155338 50458963 ~ 50476755 (+)
AMCG00017205 NA coding downstream 197418 50501043 ~ 50513355 (+)
AMCG00017206 NA coding downstream 213417 50517042 ~ 50522542 (+)
G19042 LOC103376870 non-coding upstream 115406 50155453 ~ 50155825 (+)
G19040 NA non-coding upstream 116537 50154358 ~ 50154694 (+)
G18909 NA non-coding upstream 597305 49673085 ~ 49673926 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding upstream 600942 49582264 ~ 49670289 (+)
G18865 NA non-coding upstream 777882 49436264 ~ 49493349 (+)
G19058 NA non-coding downstream 28841 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 30135 50333760 ~ 50334506 (+)
G19061 NA non-coding downstream 37792 50341417 ~ 50342150 (+)
G19062 NA non-coding downstream 47627 50351252 ~ 50351947 (+)
G19146 NA non-coding downstream 327753 50631378 ~ 50631634 (+)
AMCG00017183 NA other upstream 543664 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 867386 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 889013 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 5309630 44949034 ~ 44961601 (+)
G18192 NA other upstream 5615133 44654652 ~ 44656098 (+)
G19113 NA other downstream 248255 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 255825 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 2510628 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 2517436 52821061 ~ 52834042 (+)
G19683 NA other downstream 3032284 53335909 ~ 53339655 (+)

Expression


Co-expression Network