AMCG00017200 (vgll4,LOC107570332)


Basic Information

Item Value
gene id AMCG00017200
gene name vgll4,LOC107570332
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50331771 ~ 50351799 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017200
CGCAGCCCCAGCGGAGGAAACTGCTCACATACGAGCCATACCGAGCATAGCCTGCATGGCAGTGCAGTTAACTTGCAGCGGGCTGTGAGGACGACTGGCGCGTCTCTTTTGTCCCAGCAGCACACTTTCACAGCCTTTGAGAAGTAAAGCAGTCACCCCAAGTTTCCAAAAACCTCAAGGGCGGTCGTCGAGAGAAGCCCAGTCTCGGCGCGGCGTCGGCCTGGAGCTGCGGGCTTGTGCTGCGGTGCTCGGCTGCGAGGAAAGTTGAAGGCTGGGCCTTTAGCTCGGGAAGTGCAACGCGAAAAAGCTGGTCTTTTTGCCCTCCCGATCAATGCTTCTTACGAAAATGGACCTGTTGAACTACCAGTATCTGGACAAGATGAACAACAACATCGGGATCCTGTGCTACGACGGTGAAGCTGCTTTGAGAGCTGAGCCAAGAATGCAGTCTATACAGATGTCCTCTGCTGTCACCAACCACCGGACGGGGCCTCCTCCCATCAGCCCGAGCAAGAGGAAATACAGTGGGGACCAAGCGGACGATGAAATCGACTGCGACAATGAGCACGTGGCCAAAATGAGCCGATTGTTTGCTGCCCAGCTaggCAAGCCTGTCAATGGGGATTACCGCAAGGATCACCGCGATCGAAGCCGCAGCCCGATTGAGCGAGCTGCAGCGCCCGCCATGAGTATCCATGCCAATCACATGTACGCCCCCGTCCCCAACCTGGCCATGGATCAGCCGTTAGCACTGACCAAAAACAGCATGGATGCTGCCAGGACCGTGTCCATCTCGCCCACTCTCGGCCCGATCGAGAGGCAGCAGAATCGTCCGTCTGTGATCACATGTGCTTCTGCAAACAACCGGAACTGTAATCTCTCCTACTGCCCTGTTTCGCACAATGGCTGCACCTCCAGTCTCCCCTCCAACTTCAGGAGACCCTCCAACAcCGCGTGCGATCCAGTGATCGAGGAGCACTTCCGCCGCAGTCTGGGGAAGAACTACAAGGAGCCGGAGCCCGTGACTAACTCTGTTTCCATCACTGGCTCCGTCGATGACCACTTCGCCAAAGCTCTGGGGGAGACCTGGCTTCAGATCAAGGCTGCGAAGGGCAGCGTGTCTGGCAGCCCCGAGTCAGCGTCTCGCAGGGGCCAGTCGCCGCCCTCCTCCCACATGGTCAACCACAATCACTCCCCCTCGGTGGTGTCGTGAAGAGAGGACCACAGACCCTTCAACTCCGAACAACGTGCATGATATGGCTGAGCTTGGAACAgtgctattatatatataataggttatatatatatatatatatatatatatacaaattataatttcatcATTCTAGCaaaa

Function

symbol description
vgll4 Predicted to enable transcription coactivator binding activity. Involved in negative regulation of Wnt signaling pathway; negative regulation of cell growth; and negative regulation of hippo signaling. Predicted to be located in nucleus.

NR:

description
PREDICTED: transcription cofactor vestigial-like protein 4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017200 True 1354 mRNA 0.55 5 50331771 50351799

Neighbor

gene id symbol gene type direction distance location
AMCG00017191 NA coding downstream 486645 49844467 ~ 49845126 (-)
AMCG00017186 NA coding downstream 596424 49727583 ~ 49735347 (-)
AMCG00017187 NA coding downstream 625250 49697995 ~ 49706521 (-)
AMCG00017179 NA coding downstream 655937 49669201 ~ 49675834 (-)
AMCG00017180 poc1a,LOC108424582 coding downstream 678550 49644147 ~ 49653221 (-)
AMCG00017199 tamm41,LOC106583779 coding upstream 25466 50377265 ~ 50384569 (-)
AMCG00017203 NA coding upstream 95586 50447385 ~ 50456112 (-)
AMCG00017208 NA coding upstream 171759 50523558 ~ 50526003 (-)
AMCG00017214 raf1,LOC106571905,LOC108427788 coding upstream 220317 50572116 ~ 50593081 (-)
AMCG00017215 LOC108254961,LOC107700631,LOC106571904,LOC106566758,LOC108431553 coding upstream 291611 50643410 ~ 50652954 (-)
G19081 NA non-coding downstream 34 50329178 ~ 50331737 (-)
G19055 NA non-coding downstream 61114 50270408 ~ 50270657 (-)
G19049 NA non-coding downstream 140887 50187894 ~ 50190884 (-)
G19043 LOC103376870 non-coding downstream 175937 50155430 ~ 50155834 (-)
G19030 atp2b2,LOC107561799,LOC107570616 non-coding downstream 260267 50060847 ~ 50071504 (-)
G19130 NA non-coding upstream 179402 50531201 ~ 50621932 (-)
G19136 NA non-coding upstream 209224 50561023 ~ 50562916 (-)
G19137 NA non-coding upstream 216551 50568350 ~ 50570723 (-)
G19141 NA non-coding upstream 270382 50622181 ~ 50622439 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding upstream 285516 50637315 ~ 50638771 (-)
AMCG00017178 NA other downstream 837627 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 1837364 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 5170634 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 5674866 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 6672169 43633770 ~ 43659602 (-)
AMCG00017232 NA other upstream 832432 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 1078888 51430687 ~ 51435239 (-)
G19335 NA other upstream 1093788 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 1494797 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 2506541 52858340 ~ 52866435 (-)

Expression


Co-expression Network