AMCG00017201 (syn2,LOC107088169,LOC106904985,LOC102235059,LOC103145103,LOC103467585)
Chromosome Information
Item |
Value |
chromosome id |
CM030122.1 |
NCBI id |
CM030122.1
|
chromosome length |
54868152 |
location |
50441547 ~ 50445797 (+) |
genome version |
AmiCal1_2021_bowfin_Genome |
Sequence
>AMCG00017201
ATGCAAGTCTTTCGAAACGGCACAAAGGTGGTCAGGTCATTCAAGCCTGACTTTGTTCTGATCCGACAGCATGCATTCAGCATGGCAGAGAATGAGGATTTCCGAAACATGATCATTGGTCTGCAGTATGCTGGGATTCCCAGCATGAATTCGCTAGAGTCCATTTACAATCTCTGTGACAAGCCTTGGGCGTTTGCCCAGTTGATAAGCACCTATAAGGCCTTGGGCCCTGAAAAATTTCCACTCATAGAACAAACCTTCTACCCAAACTACAAGGAGATG
Function
symbol |
description |
syn2
|
Predicted to enable ATP binding activity. Predicted to be involved in neurotransmitter secretion and synaptic vesicle cycle. Predicted to be located in synapse. Predicted to be part of SNARE complex. Predicted to be active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and synaptic vesicle membrane. Predicted to be extrinsic component of synaptic vesicle membrane. Implicated in schizophrenia.
|
NR:
description |
PREDICTED: synapsin-2 isoform X2 |
GO:
id |
name |
namespace |
GO:0008152
|
metabolic process |
biological_process |
GO:0007269
|
neurotransmitter secretion |
biological_process |
GO:0008021
|
synaptic vesicle |
cellular_component |
GO:0005524
|
ATP binding |
molecular_function |
GO:0003824
|
catalytic activity |
molecular_function |
KEGG: NA
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
AMCG00017201 |
True |
282 |
mRNA |
0.46 |
3 |
50441547 |
50445797 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
AMCG00017204 |
NA
|
coding |
upstream |
37923 |
50403319 ~ 50403624 (+) |
AMCG00017198 |
atg7,LOC107697561,LOC106907352,LOC106911936
|
coding |
upstream |
137922 |
50271231 ~ 50303625 (+) |
AMCG00017197 |
NA
|
coding |
upstream |
174398 |
50265659 ~ 50267149 (+) |
AMCG00017196 |
slc6a1,slc6a1b,LOC107746710,LOC107670967
|
coding |
upstream |
250767 |
50178455 ~ 50190780 (+) |
AMCG00017193 |
atp2b2
|
coding |
upstream |
380182 |
50045218 ~ 50061365 (+) |
AMCG00017202 |
syn2,LOC107742035,LOC107571222,LOC107667867
|
coding |
downstream |
13166 |
50458963 ~ 50476755 (+) |
AMCG00017205 |
NA
|
coding |
downstream |
55246 |
50501043 ~ 50513355 (+) |
AMCG00017206 |
NA
|
coding |
downstream |
71245 |
50517042 ~ 50522542 (+) |
AMCG00017207 |
NA
|
coding |
downstream |
81016 |
50526813 ~ 50537670 (+) |
AMCG00017212 |
LOC106583855,LOC107742030
|
coding |
downstream |
169442 |
50615239 ~ 50621947 (+) |
G19062 |
NA
|
non-coding |
upstream |
89600 |
50351252 ~ 50351947 (+) |
G19061 |
NA
|
non-coding |
upstream |
99397 |
50341417 ~ 50342150 (+) |
G19059 |
NA
|
non-coding |
upstream |
107041 |
50333760 ~ 50334506 (+) |
G19058 |
NA
|
non-coding |
upstream |
108181 |
50332466 ~ 50333366 (+) |
G19042 |
LOC103376870
|
non-coding |
upstream |
285722 |
50155453 ~ 50155825 (+) |
G19146 |
NA
|
non-coding |
downstream |
185581 |
50631378 ~ 50631634 (+) |
G19152 |
NA
|
non-coding |
downstream |
194790 |
50640587 ~ 50640802 (+) |
G19195 |
NA
|
non-coding |
downstream |
281943 |
50727740 ~ 50728151 (+) |
G19245 |
NA
|
non-coding |
downstream |
691496 |
51137293 ~ 51138835 (+) |
G19275 |
NA
|
non-coding |
downstream |
850035 |
51295832 ~ 51296718 (+) |
AMCG00017183 |
NA
|
other |
upstream |
713980 |
49713467 ~ 49727567 (+) |
AMCG00017173 |
NA
|
other |
upstream |
1037702 |
49402531 ~ 49403845 (+) |
AMCG00017167 |
NA
|
other |
upstream |
1059329 |
49372022 ~ 49382218 (+) |
AMCG00017099 |
cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493
|
other |
upstream |
5479946 |
44949034 ~ 44961601 (+) |
G18192 |
NA
|
other |
upstream |
5785449 |
44654652 ~ 44656098 (+) |
G19113 |
NA
|
other |
downstream |
106083 |
50551880 ~ 50552985 (+) |
G19114 |
raf1,LOC108276324
|
other |
downstream |
113653 |
50559450 ~ 50563278 (+) |
AMCG00017280 |
NA
|
other |
downstream |
2368456 |
52814253 ~ 52817369 (+) |
AMCG00017287 |
NA
|
other |
downstream |
2375264 |
52821061 ~ 52834042 (+) |
G19683 |
NA
|
other |
downstream |
2890112 |
53335909 ~ 53339655 (+) |
Expression