AMCG00017202 (syn2,LOC107742035,LOC107571222,LOC107667867)


Basic Information

Item Value
gene id AMCG00017202
gene name syn2,LOC107742035,LOC107571222,LOC107667867
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50458963 ~ 50476755 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017202
GATCGCAATGCCTACGTTTCCTGTAGTTGTGAAAATTGGACATGCTCACTCAGGCATGGGAAAGGTGAAGGTAGACAATCACTATGACTTCCAGGACATCGCCAGCGTGGTTGCCCTCACACAGACCTACACGACCACAGAGCCCTACATTGACTCCAAGTATGACATAAGGATTCAAAAGATAGGCAATAATTACAAAGCTTACATGAGGACGTCCATCTCTGGCAACTGGAAGACGAACACCGGCTCCGCGATGCTGGAGCAGGTTGCCATGACTGACAGGTATAAGGTTTGGGTGGACACCTGCTCCGAGGTTTTTGGCGGTTTGGATATCTGCGCAGTCAAAGCAATCCATGGCAAAGATGGGAAAGATTATATTACTGAGGTAGTGGGCTCTTCGATGCAGCTGGTTGGGGAGCATCAGGCGGAAGACCGGCAGCTCATTGCCGACATGGTTCTGACTAAAATGAACCAGGTGGTACCGAAGACATCCATGCCTTCTCCCCAGAGACCCACGACCGCCCAGCCCCCGCAGAGCGGCTCACTAAAGGAAGGCCTGTCCGACCCCAGCAAGATCCCGCCACAGCGGCCCCCGCCTCAAGGGGGCCCAGTACAACCCCAAGGATCGCAAACTCAAAGTCAGGAGCCTCCATCAGAGCAAGCTCAGAGTGTCTCTGCACAGGAGCCCCGTCCCCCGCTGCCCCCAGCCCCCACCACACAGCAGCCCCGGCCCCAGGGACAAGGGGCTGCCCCTGTGGGGAAGCCGGACGAGCCGCCTCCGAAACCACTGCCTCCGAAACCACTGCCCCCGAAACCTCAGCCTCCGAAAGTGCAGCCGCAGGCCCAGCCACCGCCCCAGCCTGCCCCGCAGCCGAAGCCCCAGGCCCATCCGCAGCTGAATAAATCTCAGTCCTTGACAAATGCCTTCAACTTCACCGAGTCGTCGTTCTTTCGTTCGGCCAACGAGGACGAAGCCAAGGCCGAGACCATCCGAAACCTGAGGAAGTCCTTTGCCAGTCTGTTTTCGGACTAG

Function

symbol description
syn2 Predicted to enable ATP binding activity. Predicted to be involved in neurotransmitter secretion and synaptic vesicle cycle. Predicted to be located in synapse. Predicted to be part of SNARE complex. Predicted to be active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and synaptic vesicle membrane. Predicted to be extrinsic component of synaptic vesicle membrane. Implicated in schizophrenia.

NR:

description
PREDICTED: synapsin-2 isoform X1

GO: NA

KEGG:

id description
K19941 SYN; synapsin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017202 True 1033 mRNA 0.58 8 50458963 50476755

Neighbor

gene id symbol gene type direction distance location
AMCG00017201 syn2,LOC107088169,LOC106904985,LOC102235059,LOC103145103,LOC103467585 coding upstream 13166 50441547 ~ 50445797 (+)
AMCG00017204 NA coding upstream 55339 50403319 ~ 50403624 (+)
AMCG00017198 atg7,LOC107697561,LOC106907352,LOC106911936 coding upstream 155338 50271231 ~ 50303625 (+)
AMCG00017197 NA coding upstream 191814 50265659 ~ 50267149 (+)
AMCG00017196 slc6a1,slc6a1b,LOC107746710,LOC107670967 coding upstream 268183 50178455 ~ 50190780 (+)
AMCG00017205 NA coding downstream 24288 50501043 ~ 50513355 (+)
AMCG00017206 NA coding downstream 40287 50517042 ~ 50522542 (+)
AMCG00017207 NA coding downstream 50058 50526813 ~ 50537670 (+)
AMCG00017212 LOC106583855,LOC107742030 coding downstream 138484 50615239 ~ 50621947 (+)
AMCG00017210 isy1,LOC108431508,LOC107700632,LOC108254962 coding downstream 155353 50632108 ~ 50638968 (+)
G19062 NA non-coding upstream 107016 50351252 ~ 50351947 (+)
G19061 NA non-coding upstream 116813 50341417 ~ 50342150 (+)
G19059 NA non-coding upstream 124457 50333760 ~ 50334506 (+)
G19058 NA non-coding upstream 125597 50332466 ~ 50333366 (+)
G19042 LOC103376870 non-coding upstream 303138 50155453 ~ 50155825 (+)
G19146 NA non-coding downstream 154623 50631378 ~ 50631634 (+)
G19152 NA non-coding downstream 163832 50640587 ~ 50640802 (+)
G19195 NA non-coding downstream 250985 50727740 ~ 50728151 (+)
G19245 NA non-coding downstream 660538 51137293 ~ 51138835 (+)
G19275 NA non-coding downstream 819077 51295832 ~ 51296718 (+)
AMCG00017183 NA other upstream 731396 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 1055118 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 1076745 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 5497362 44949034 ~ 44961601 (+)
G18192 NA other upstream 5802865 44654652 ~ 44656098 (+)
G19113 NA other downstream 75125 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 82695 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 2337498 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 2344306 52821061 ~ 52834042 (+)
G19683 NA other downstream 2859154 53335909 ~ 53339655 (+)

Expression


Co-expression Network