AMCG00017203


Basic Information

Item Value
gene id AMCG00017203
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50447385 ~ 50456112 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017203
ATGAAAGTCCCTTGTCCTGGGTGGCTGGCGTTAGTGCTGGTTCTCCTGACCCTCAGGCTGCAGGACTTGGTCCAGGCGTGCAGCTGCGCCCCAGCGCACCCCCAGGAGGCATTCTGCGGCTCTGAAATAGTAATTCGGGCAAAGGTCTTGGGTGAGAAGATTGTATCTCCTAACAACAGCTCTTCACTTCATTTCAAGCAGATCCAGTATGAGATAAAGGTGGTGAAGatGTTTAAGGGCTTTGAGAAGGTGAAGGATATCCAGTATGTTTACACCCCGGTTTTCTCCTCCCTCTGTGGTGTGAGGCTGGACTCTAGCAATAAGGTTCAATACCTTCTGTCagGCAGAATGTTGAATGATGGGAAGGTTTTTATTGGCCTTTGTGATTTCATTGAGCCCTGGGATAACCTTTCAATGTCCCAAAAGAAAAACCTCAATCACAGATACGAAATGGGCTGTGACTGCAGAATTTTCAGGTGCTACAATCTGCCGTGCACCCTTAGCACAGAGAACGAGTGTCTCTGGACAGACTGGCTGACAGATAAGAGCATGAACGGAGAGCAGGCCAAGCAGTACGCCTGCATCAAGCGCAGCGACGGCTCCTGCAGCTGGTACCGGGGAGGGCCCCCCCCGGACAAAGAGTTCCTGGACATTTCTGACCCCTAA

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005576 extracellular region cellular_component
GO:0008191 metalloendopeptidase inhibitor activity molecular_function

KEGG:

id description
K22584 TIMP4; metalloproteinase inhibitor 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017203 True 666 mRNA 0.51 5 50447385 50456112

Neighbor

gene id symbol gene type direction distance location
AMCG00017199 tamm41,LOC106583779 coding downstream 62816 50377265 ~ 50384569 (-)
AMCG00017200 vgll4,LOC107570332 coding downstream 95586 50331771 ~ 50351799 (-)
AMCG00017191 NA coding downstream 602259 49844467 ~ 49845126 (-)
AMCG00017186 NA coding downstream 712038 49727583 ~ 49735347 (-)
AMCG00017187 NA coding downstream 740864 49697995 ~ 49706521 (-)
AMCG00017208 NA coding upstream 67446 50523558 ~ 50526003 (-)
AMCG00017214 raf1,LOC106571905,LOC108427788 coding upstream 116004 50572116 ~ 50593081 (-)
AMCG00017215 LOC108254961,LOC107700631,LOC106571904,LOC106566758,LOC108431553 coding upstream 187298 50643410 ~ 50652954 (-)
AMCG00017213 rab43,LOC107700634,LOC107758163,LOC107675972 coding upstream 200007 50656119 ~ 50663669 (-)
AMCG00017216 NA coding upstream 214476 50670588 ~ 50671364 (-)
G19081 NA non-coding downstream 115648 50329178 ~ 50331737 (-)
G19055 NA non-coding downstream 176728 50270408 ~ 50270657 (-)
G19049 NA non-coding downstream 256501 50187894 ~ 50190884 (-)
G19043 LOC103376870 non-coding downstream 291551 50155430 ~ 50155834 (-)
G19030 atp2b2,LOC107561799,LOC107570616 non-coding downstream 375881 50060847 ~ 50071504 (-)
G19130 NA non-coding upstream 75089 50531201 ~ 50621932 (-)
G19136 NA non-coding upstream 104911 50561023 ~ 50562916 (-)
G19137 NA non-coding upstream 112238 50568350 ~ 50570723 (-)
G19141 NA non-coding upstream 166069 50622181 ~ 50622439 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding upstream 181203 50637315 ~ 50638771 (-)
AMCG00017178 NA other downstream 953241 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 1952978 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 5286248 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 5790480 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 6787783 43633770 ~ 43659602 (-)
AMCG00017232 NA other upstream 728119 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 974575 51430687 ~ 51435239 (-)
G19335 NA other upstream 989475 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 1390484 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 2402228 52858340 ~ 52866435 (-)

Expression


Co-expression Network