AMCG00017206


Basic Information

Item Value
gene id AMCG00017206
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50517042 ~ 50522542 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017206
CGACGATATAAAAAATTGTGCACTAGATATGAGtatcatattaaatatgaaGAGTATGATTAAGATTTGACAGAGCTGCCTGCTCTGGGATGGGATCTAGGGCTTGATTAACCAGCACCACTGAGATGACAGAAGCCGTCTTCCAGGCCCCTAAGCGTCGAGCCAGGGTTTACGAGTCCTATGAAGCTCCTTTCCCTGTGCCAACCAATGCAGAGGAAGCTAAACAACAGGAGTACAAGGTCTACACAGCGGAGATGATTAACCAGAATATAATTGTGAGGGATCCAGACCATATACAGGCCATATACGGAAAGGGTTATTTTGGCAAAGGTATCTTATCAAGAAGCAGACCATTGTACAGCATTTCAGACCAGTGGGAGGATCTTGGTTACAGAAGTCTGCCTGTGATTTCTTCCTCCAAGTACCAGCTTCATCTAGACTGGGCCAGGGGGTTTCTCCAAGCACAGGGACTCGATGACGAATCCATCAGTCAGACCCTGGAGAAATACATCAACCCTGTGGAGCTGCCCAGCACTGACAAGACAGCGGAGAAGAATGGAGGCAGCAATGGGATGGAGGGGTCTCCTCGGGAGGATAAGAGAGAAGCGGAGGAACCAAAGTCATCAAGCTGCTCTCCATCCACCGACACGGGACGGCTGAGTGGTCCCCAGTGTGGCTCTCAGTCAAAGAGTCCAGAGAGAAAGAAGGCCCGGAGGCAGGGGGACCGTCAGTTCGATCCCCTGGCTGATATTTATCCAGAGGAACCTGAAGAGATAGACGCTGAAGCCTTGCACGCTGTGAAGTGTGAGAAGCACGACGACTGGCTTGTGCACTGTGGCTGCCGGCTGAAGGACAGTGTCTTGATGACCGTGCTCAAGAACAAGCCAGAAGCACACAGGCCCGCCTTCTCCCCTGGGTGCGAGTACGTACTGactCAAAGAACTGAACGATTAGTCTGCAGAATGAACCCTTTTCGAATGATTGAATACCTGCAGCTGAGTCTAGAAGAGgcATTTTTCTTGGTATACGCATTAGGATGTTTATCCATTTACTATAATGAGGAACCTTTAACAATTCTCAGTCTCTGGGAAATCTTTAGTTCAATCCAACCAAATTTCCAAACCTCCTATGTGGCTTACCACTACTTTAGAAGTAAAGGATGGGTGCCAAAAGTCGGGATGAAATATGGAACAGACCTCTtgctgtaTCGGAAAGGACCTGCATTTTACCACGCCAGCTACTCCGTTGTGGTGGAGAGAGTGGACGACACCCTCCGGGGTGCAGCCTTGAGGCCGTTCAGCTGGCGATCACTGGCTGCTCTCAGTAGGATCACTGGCAATGTTTCCAAGGAGCTGATGCTGTGCTATGTGATCTGGCCACTGGATATGACGGAGGAAGAAAGGTGTTCCCCTGAGTGTCTGAAAAGGATCAGAGTTCAGgagATTATTGTAAGCAGATGGGTTTCTTCACGAGAACGCACCGAACAAGAAGAGATATAACCCAAGGTGTTCAACTGTTTCCCAGCTTATTGTTTCTGACTGAGGACTGACTACAGTGCATTTTTTCAGTAAAACACTCTCCATTCCTGTTCATATTGTGTGACAATGTGCACAACAGGTGTGAACGACAGTGTGTTCTTTAAATGGTTTTAGATTTCATGAAGGTTCATTTAAAGTTAAACCATGCCCTGAAATAATGAGCGGGCAGCTGCTGTTCAGTGCCAAGAGTTACGGATTATTTTGGAGGCTAATGTGGTTTCATGTACAGAGAGGGCTAAACTAGGGTCAGACCCATTTCATTCATGATTGATACTTAACTTCTATCCATATGTGTAAAAAGCTTAGATATGgctgtttatataatatatagacttacatatatgtgaatatttatGGTTATACTGTGCtggaattttgttttattttttgattaaatgttattaaattgtaaaaagaa

Function

GO: NA

KEGG:

id description
K15322 TSEN2; tRNA-splicing endonuclease subunit Sen2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017206 True 1956 mRNA 0.46 12 50517042 50522542

Neighbor

gene id symbol gene type direction distance location
AMCG00017205 NA coding upstream 3687 50501043 ~ 50513355 (+)
AMCG00017202 syn2,LOC107742035,LOC107571222,LOC107667867 coding upstream 40287 50458963 ~ 50476755 (+)
AMCG00017201 syn2,LOC107088169,LOC106904985,LOC102235059,LOC103145103,LOC103467585 coding upstream 71245 50441547 ~ 50445797 (+)
AMCG00017204 NA coding upstream 113418 50403319 ~ 50403624 (+)
AMCG00017198 atg7,LOC107697561,LOC106907352,LOC106911936 coding upstream 213417 50271231 ~ 50303625 (+)
AMCG00017207 NA coding downstream 4271 50526813 ~ 50537670 (+)
AMCG00017212 LOC106583855,LOC107742030 coding downstream 92697 50615239 ~ 50621947 (+)
AMCG00017210 isy1,LOC108431508,LOC107700632,LOC108254962 coding downstream 109566 50632108 ~ 50638968 (+)
AMCG00017211 NA coding downstream 122570 50645112 ~ 50652585 (+)
AMCG00017209 NA coding downstream 141784 50664326 ~ 50672185 (+)
G19062 NA non-coding upstream 165095 50351252 ~ 50351947 (+)
G19061 NA non-coding upstream 174892 50341417 ~ 50342150 (+)
G19059 NA non-coding upstream 182536 50333760 ~ 50334506 (+)
G19058 NA non-coding upstream 183676 50332466 ~ 50333366 (+)
G19042 LOC103376870 non-coding upstream 361217 50155453 ~ 50155825 (+)
G19146 NA non-coding downstream 108836 50631378 ~ 50631634 (+)
G19152 NA non-coding downstream 118045 50640587 ~ 50640802 (+)
G19195 NA non-coding downstream 205198 50727740 ~ 50728151 (+)
G19245 NA non-coding downstream 614751 51137293 ~ 51138835 (+)
G19275 NA non-coding downstream 773290 51295832 ~ 51296718 (+)
AMCG00017183 NA other upstream 789475 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 1113197 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 1134824 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 5555441 44949034 ~ 44961601 (+)
G18192 NA other upstream 5860944 44654652 ~ 44656098 (+)
G19113 NA other downstream 29338 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 36908 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 2291711 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 2298519 52821061 ~ 52834042 (+)
G19683 NA other downstream 2813367 53335909 ~ 53339655 (+)

Expression


Co-expression Network