AMCG00017208


Basic Information

Item Value
gene id AMCG00017208
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50523558 ~ 50526003 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017208
GTTACTTCCCATGTCAATCAAGTGACGTCACAGAGCAGGTACTCTAGTCTCCCCGGTCGCAGTGTCCACAATGACACTTGTTACTTTGTTGCTCTTGAACTGTCAGCTGCCTTACAGCGTGTCCGTCTCTGCTCCAGATGGAAAACAGCGTGATCAAATTCCACCATTGCGAGAAGGACATCTACTGCTTTTTTGTCCCAGAACAGTGTCCCGTTTGCGGGGAAAGCCTGAGTTCCAGACGGCTCCAAGAGGCGCCTGTTAGCATCCCCAGCCCGTTTGTGAACGGACAGAAGATCAAGTGCTCCTTCCTGGTTAAACCCACCAAAGGAACCTTTCTCAGAGAGTACGATGGGAGATCGGATCTACACGTTGGGATCACCAACACTAAAGGCGTGGTTTATAACTACAATGAGACGGGGGTGTGCAGAGACGAGCAGGGCTGGGCTCAGTCCGTCAGTGTGCCCCTGGTTCAGCCCGACATGTACAGTCTGATTAATCAATGGGACCCCTACCTGGAGCAGTTCTCTTTAGCAGAGATGTGGAACCCACAGAGATATAATGAGACCGATCACAACTGCTACACATATGCATTGACTTTCATCAATTGTGTGCTGGCCACACAAGGCAAGCGCAACCTGACCAAGACTGAGTTCACAGAAAAGTTCGTCCTCCCCCGCACCAAGAAAGCATCCCGATACATCACTCTCTACCAGGAGATCTCCGAGAACTACTTTTACATAGTGGACAGTTCCCAGCAGGAAGATGACAACAGCAGCATTTGAACACCATTAAGTTAGAATGGTTTAATGAAGTCCGTAGAAGAGAATGCATTTGATAAACTGAAAGgtaaagtacagtatataaactTTGCTTAAATCACTTGCTTGTAAGTTCATCTTGGTgttccttttaaatgtattaaatcaggGATTTTACATATGAAAAAATTGTAATACAGATCAGTTTGATATActtaaattcttattttttaaaatgcttttttgtttcctgtctCGCAATATGACGTTCAGCTTTTAAACAGGCAGGACAAGAAGTGACTTTACTTTATGTGTTGTCAGACTGTTTGACTGACAAAACAGAGCTACCTCTAAAGTGGTGAAGAATTTAATATAAGCACAATGCTTTCACAAGATTTCAATACTAATTAAGGTAAAAAAATTGTGCTTGTATGCAGAGATTCTCTTGAAGCTGAAATCCAGGATAGTTGTGatgcttttgattttaaaaatgtgttaaacaattTCACACGCATGTATCATATCACAGTTTTCTGCAACATTTTGCTCaatatgcatataaataaaatgttaat

Function

GO:

id name namespace
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017208 True 1333 mRNA 0.42 4 50523558 50526003

Neighbor

gene id symbol gene type direction distance location
AMCG00017203 NA coding downstream 67446 50447385 ~ 50456112 (-)
AMCG00017199 tamm41,LOC106583779 coding downstream 138989 50377265 ~ 50384569 (-)
AMCG00017200 vgll4,LOC107570332 coding downstream 171759 50331771 ~ 50351799 (-)
AMCG00017191 NA coding downstream 678432 49844467 ~ 49845126 (-)
AMCG00017186 NA coding downstream 788211 49727583 ~ 49735347 (-)
AMCG00017214 raf1,LOC106571905,LOC108427788 coding upstream 46113 50572116 ~ 50593081 (-)
AMCG00017215 LOC108254961,LOC107700631,LOC106571904,LOC106566758,LOC108431553 coding upstream 117407 50643410 ~ 50652954 (-)
AMCG00017213 rab43,LOC107700634,LOC107758163,LOC107675972 coding upstream 130116 50656119 ~ 50663669 (-)
AMCG00017216 NA coding upstream 144585 50670588 ~ 50671364 (-)
AMCG00017220 LOC107581369 coding upstream 150248 50676251 ~ 50679198 (-)
G19081 NA non-coding downstream 191821 50329178 ~ 50331737 (-)
G19055 NA non-coding downstream 252901 50270408 ~ 50270657 (-)
G19049 NA non-coding downstream 332674 50187894 ~ 50190884 (-)
G19043 LOC103376870 non-coding downstream 367724 50155430 ~ 50155834 (-)
G19030 atp2b2,LOC107561799,LOC107570616 non-coding downstream 452054 50060847 ~ 50071504 (-)
G19130 NA non-coding upstream 5198 50531201 ~ 50621932 (-)
G19136 NA non-coding upstream 35020 50561023 ~ 50562916 (-)
G19137 NA non-coding upstream 42347 50568350 ~ 50570723 (-)
G19141 NA non-coding upstream 96178 50622181 ~ 50622439 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding upstream 111312 50637315 ~ 50638771 (-)
AMCG00017178 NA other downstream 1029414 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 2029151 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 5362421 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 5866653 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 6863956 43633770 ~ 43659602 (-)
AMCG00017232 NA other upstream 658228 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 904684 51430687 ~ 51435239 (-)
G19335 NA other upstream 919584 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 1320593 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 2332337 52858340 ~ 52866435 (-)

Expression


Co-expression Network