Item | Value |
---|---|
gene id | AMCG00017210 |
gene name | isy1,LOC108431508,LOC107700632,LOC108254962 |
gene type | coding |
species | bowfin (Amia calva) |
category of species | ecological fish |
Item | Value |
---|---|
chromosome id | CM030122.1 |
NCBI id | CM030122.1 |
chromosome length | 54868152 |
location | 50632108 ~ 50638968 (+) |
genome version | AmiCal1_2021_bowfin_Genome |
symbol | description |
---|---|
isy1 | Predicted to be involved in generation of catalytic spliceosome for second transesterification step and mRNA 3'-splice site recognition. Predicted to be located in nucleus. Predicted to be part of Prp19 complex and spliceosomal complex. Orthologous to several human genes including ISY1-RAB43 (ISY1-RAB43 readthrough). |
description |
---|
PREDICTED: pre-mRNA-splicing factor ISY1 homolog |
id | description |
---|---|
K12870 | ISY1; pre-mRNA-splicing factor ISY1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
AMCG00017210 | True | 1504 | mRNA | 0.44 | 11 | 50632108 | 50638968 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
AMCG00017212 | LOC106583855,LOC107742030 | coding | upstream | 10161 | 50615239 ~ 50621947 (+) |
AMCG00017207 | NA | coding | upstream | 94438 | 50526813 ~ 50537670 (+) |
AMCG00017206 | NA | coding | upstream | 109566 | 50517042 ~ 50522542 (+) |
AMCG00017205 | NA | coding | upstream | 118753 | 50501043 ~ 50513355 (+) |
AMCG00017202 | syn2,LOC107742035,LOC107571222,LOC107667867 | coding | upstream | 155353 | 50458963 ~ 50476755 (+) |
AMCG00017211 | NA | coding | downstream | 6144 | 50645112 ~ 50652585 (+) |
AMCG00017209 | NA | coding | downstream | 25358 | 50664326 ~ 50672185 (+) |
AMCG00017217 | NA | coding | downstream | 57878 | 50696846 ~ 50711492 (+) |
AMCG00017225 | hdac11 | coding | downstream | 321865 | 50960833 ~ 50972601 (+) |
AMCG00017224 | LOC107685648,LOC107727860,LOC107691382,LOC107581396,LOC107749433 | coding | downstream | 346291 | 50985259 ~ 50989853 (+) |
G19146 | NA | non-coding | upstream | 474 | 50631378 ~ 50631634 (+) |
G19062 | NA | non-coding | upstream | 280161 | 50351252 ~ 50351947 (+) |
G19061 | NA | non-coding | upstream | 289958 | 50341417 ~ 50342150 (+) |
G19059 | NA | non-coding | upstream | 297602 | 50333760 ~ 50334506 (+) |
G19058 | NA | non-coding | upstream | 298742 | 50332466 ~ 50333366 (+) |
G19152 | NA | non-coding | downstream | 1619 | 50640587 ~ 50640802 (+) |
G19195 | NA | non-coding | downstream | 88772 | 50727740 ~ 50728151 (+) |
G19245 | NA | non-coding | downstream | 498325 | 51137293 ~ 51138835 (+) |
G19275 | NA | non-coding | downstream | 656864 | 51295832 ~ 51296718 (+) |
G19292 | NA | non-coding | downstream | 700945 | 51339913 ~ 51340117 (+) |
G19114 | raf1,LOC108276324 | other | upstream | 68830 | 50559450 ~ 50563278 (+) |
G19113 | NA | other | upstream | 79123 | 50551880 ~ 50552985 (+) |
AMCG00017183 | NA | other | upstream | 904541 | 49713467 ~ 49727567 (+) |
AMCG00017173 | NA | other | upstream | 1228263 | 49402531 ~ 49403845 (+) |
AMCG00017167 | NA | other | upstream | 1249890 | 49372022 ~ 49382218 (+) |
AMCG00017280 | NA | other | downstream | 2175285 | 52814253 ~ 52817369 (+) |
AMCG00017287 | NA | other | downstream | 2182093 | 52821061 ~ 52834042 (+) |
G19683 | NA | other | downstream | 2696941 | 53335909 ~ 53339655 (+) |
G19754 | NA | other | downstream | 2864464 | 53503432 ~ 53536464 (+) |
G19829 | NA | other | downstream | 3151579 | 53790547 ~ 53792694 (+) |