AMCG00017212 (LOC106583855,LOC107742030)


Basic Information

Item Value
gene id AMCG00017212
gene name LOC106583855,LOC107742030
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50615239 ~ 50621947 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017212
aaaaaaaagcGAAATATTGTTTCAAAACCGAGCTGTGTTCACATCCCGTCGTGTGCGGGCGGTTCATGATCCGGGAATAGAGCGGAGAAACCGAGAATATCCCCCGAAAAAAGCGAGCCAGTCGAGGGGGATTTCTGGGAAAGTGTGAACTCTTAAAGTGGAAATGAACAGCAGTGAGTGCTTCAAATGCGGCCGCAATGGCCATTGGGCCCGCGAGTGCCCCACTGGAGGAGGACGTGGACGTGGGGGCAGGAGCCGTGGCCGAGGGGGCTTCACATCAGCCAGAGACATCTGCTATCGTTGTGGAGAACCAGGCCATGTTGCTAAGGACTGTGAACGTCAGGAGGATGCATGCTACAACTGTGGCAAAGGTGGTCACATCGCGAAGGACTGCAAGGAGCCCAAGAAGGAGAGGGAGCAGCACTGCTACAACTGTGGGAAGCCCGGGCACCTGGCACGCGACTGCGACCACGCCGATGAGCAAAAGTGCTACTCTTGTGGAGAGTTTGGTCACATCCAGAAAGACTGCACTAAAGTGAAGTGCTACAGGTGTGGTGAAACTGGTCACGTTGCCATTAACTGCAGCAAGACGAGTGAAGTCAACTGCTACCGCTGCGGCGAGTCCGGGCACCTGGCGAGAGAATGCACCATCGAGGCCACAGCTTAATCCTTTTCCTTTGTCGCCCCTCCTTTTTCTGATTGAtggttgtattattttctctgaaTCCTCTTCACTGGCCAAAGGTTGGCAGATAGAGGCTAGTCCCAGGCCAGTGAGCTTTACTTGACATGTAAAAGGAGGAAAGGGGTGGAAAAAAATCGACTTTctgcatttaatacaaaaaaaaaaaatgtttatgtttagtttGGTAGAGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCTTTCCATGCCACTGGTAAATAGGGATTGAAGAATGGGAAGAGACGAGTCAGATAAGCCCCCCTCCGGCGTCTTGGCAGCGATTCTgagtgaggggggggggaaaaataaaatcgtGGGAGTGTGAAAACTCCcatgtatgatttaatttttgtttggtgggaaaaaaaaaataatgtgttggcCTAAGAGTGTTTGACCTCGGAAGCAGTTCACAACATAAGATACATCAGTCTCGGGGCCCTACCAGCAGTACACAGCTAAGTGGGAGTTAACAGAaaagaaatattatatattaataaacctgtttaatttctgaaagattaaaaaaaaaatcaggataAATTGTTTTATATCTGCCAGCCGTTCGCAAGCTACGGCTGCGGCATTCGGAGATACTCATTAGGTCAAAGTTTCGGCCAAGGTTTTTCAAAGTAGTTTAGATAATTTAACCCAAGGAGGAATTAAAACTTCAAGGAGAACAGTAGAAAGCAGAGTCTGAAGTTACTCGAGTAAGGAGAATGTTTTcacagaaatcaaaatgttatttttgtacaatatatCACTTAGACTACTGTAAAAATATCATTTGCTTGTACTCAGTTTTTAAGTCGGAAGGTAAATGCAACTGAAGTCCtagaaaatagaaatgtaattttaaactaTCAATAAAgctggaggaggaaggggagcaagACTGAAGTTTCTTTTCTTGGCTACTTTCTTTGGATCTGTTGgatattaactttttttctttattgacaAAGGGGTTATTGCTGAAATTTAAGACATCGCTATAGTTAATGTAAAGAAATGTGTTGCTGTTGGGTGATTCTTGAATTGGGTTGCCACGACATACATTTTTCTCCCTCAAAACCCATACACCTTTTTAATAAAACCTATACGAACTCGTTCTGCTCAGAAAAGGAGAATGTGGGTTTCTCTGGAATGCCTTGGCCCACATTTGGGTGAAAACCAAACCGCTTGCATGAATATCCTACGAGTCTTTAATGACTGAGTTTCTAATCTGTTGATCAGACAAACAAGCTTCATGTGCTGTTAGAACATGTGTTATGTGCATAAGCTAATAAAAATCCAACACGGCTTTCTCTAAATCTACAGTTGGTATAGCCTGGGGATCGTAACGAGCCAGGTGGAAACTGTTTCTGTATCAGGACTGCAAACGGGAGAATTCAATTGTGCTTTCATCTCAAAAAGTACGGATAAGTCTAACCCTCATCCATATCCTAGAATCGGCCTTTAAGTAGTCCCTGATTTATGGTGTGAGATACACTTTGAATTCTCGTTAAACCTGTTTGTAAATAGCAAGGATATAAATCAACTATTATTTGACTGACAAGATAAAATTATGTATCTTTTACCATTCTTGAATGTGTTACAACTTTTGGGGGGGATCTTAGGCAATGCATTGATTTAGGACTTGACATAAGTGAATAAACTTGCCATTTATGGTTACAAAA

Function

NR:

description
PREDICTED: cellular nucleic acid-binding protein-like, partial

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09250 CNBP; cellular nucleic acid-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017212 True 2387 mRNA 0.43 5 50615239 50621947

Neighbor

gene id symbol gene type direction distance location
AMCG00017207 NA coding upstream 77569 50526813 ~ 50537670 (+)
AMCG00017206 NA coding upstream 92697 50517042 ~ 50522542 (+)
AMCG00017205 NA coding upstream 101884 50501043 ~ 50513355 (+)
AMCG00017202 syn2,LOC107742035,LOC107571222,LOC107667867 coding upstream 138484 50458963 ~ 50476755 (+)
AMCG00017201 syn2,LOC107088169,LOC106904985,LOC102235059,LOC103145103,LOC103467585 coding upstream 169442 50441547 ~ 50445797 (+)
AMCG00017210 isy1,LOC108431508,LOC107700632,LOC108254962 coding downstream 10161 50632108 ~ 50638968 (+)
AMCG00017211 NA coding downstream 23165 50645112 ~ 50652585 (+)
AMCG00017209 NA coding downstream 42379 50664326 ~ 50672185 (+)
AMCG00017217 NA coding downstream 74899 50696846 ~ 50711492 (+)
AMCG00017225 hdac11 coding downstream 338886 50960833 ~ 50972601 (+)
G19062 NA non-coding upstream 263292 50351252 ~ 50351947 (+)
G19061 NA non-coding upstream 273089 50341417 ~ 50342150 (+)
G19059 NA non-coding upstream 280733 50333760 ~ 50334506 (+)
G19058 NA non-coding upstream 281873 50332466 ~ 50333366 (+)
G19042 LOC103376870 non-coding upstream 459414 50155453 ~ 50155825 (+)
G19146 NA non-coding downstream 9431 50631378 ~ 50631634 (+)
G19152 NA non-coding downstream 18640 50640587 ~ 50640802 (+)
G19195 NA non-coding downstream 105793 50727740 ~ 50728151 (+)
G19245 NA non-coding downstream 515346 51137293 ~ 51138835 (+)
G19275 NA non-coding downstream 673885 51295832 ~ 51296718 (+)
G19114 raf1,LOC108276324 other upstream 51961 50559450 ~ 50563278 (+)
G19113 NA other upstream 62254 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 887672 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 1211394 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 1233021 49372022 ~ 49382218 (+)
AMCG00017280 NA other downstream 2192306 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 2199114 52821061 ~ 52834042 (+)
G19683 NA other downstream 2713962 53335909 ~ 53339655 (+)
G19754 NA other downstream 2881485 53503432 ~ 53536464 (+)
G19829 NA other downstream 3168600 53790547 ~ 53792694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01067678_00003958_00004350 CNBP coding CI01067678 null 3002 ~ 4350 (-)