AMCG00017214 (raf1,LOC106571905,LOC108427788)


Basic Information

Item Value
gene id AMCG00017214
gene name raf1,LOC106571905,LOC108427788
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50572116 ~ 50593081 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017214
GCCAGCTGCTTTTGCCAATGGAGCACATCCAAGGAGCCTGGAAGACCATTAGTAATGGTTTTGGGTTTAAAGACTCTGTGTTTGAAGGTCAATGCATGTCGCCCACCATCGTCCAAGGCTTTGCCTACCAACGGCGTTCGTCCGACGATGGCAAAATCCCAGACTGCAGCAAGACAAGCAGCACCATCCGGGTCTACCTACCCAACCAGCAGCGCACGGTGGTGAATGTGAAGCCTGGCATGACACTTCACAACTGCCTCATCAAGGCTCTGAAAGTGAGAGGCCTGCAGCCCGAGTGCTGTGCAGTCTTCCGGTTACACCCTGGACAGAGAAGAAAATCACGTATGGATTGGAATACAGATTCTACCTCATTGATTGGGGAGGAGCTGTTGGTGGAGGTCTTGGACCATGTCCCGTTGACAACGCACAATTTTGTTAGGAAAACATTTCTGAAGTTGGCTTTCTGTGACATCTGTCAGAAGTTTCTTTTAAATGGTTTCCGCTGCCAGACCTGTGGCTATAAGTTCCACGAACACTGCAGTACCAAAGTCCCTACCATGTGCGTGGACTGGAGCAACATCAGACAGCTTCTATTGTTCCCAACTCCAGGAGAGAGTGGGGgtccctctctgcctcccctGACATCCCGGCGCATGCGTGACTCCCTCTCCCGATTCCCTGCCAGCTCTCAGCACAGACATTCAACCCCCCATGCCTTTAATTACATTACACCCTACACACCCACAGGGGGCGCTCTTTCTCAGAGACAGAGGTCTACGTCCACTCCTAACGTCCACATGGTCAGCACCACCATGCCGGTTGACAGCAGCATCATAGAGGACGCAATGAGAAGTCACGAATCAGGAAGCCCCAGTCAAAGTCCGACAGGCTGGGCTCAGACCAAAACCCCAGCCCCTGCCCAGAGAGAGCGAGCACCTTCCTCCAACAcgcaagagaaaaacaaaatcGTCCTGCTGGGGGGCCACTTCCTGTGCCGGTCGCCACGCTGCTGCCACTACTGCGGTTACTGTGTTCTCCGGGGCCGGCCACACCCCTCCCAGCCG

Function

symbol description
raf1 Enables enzyme binding activity; identical protein binding activity; and protein serine/threonine kinase activity. Involved in several processes, including activation of adenylate cyclase activity; positive regulation of MAPK cascade; and positive regulation of peptidyl-serine phosphorylation. Located in Golgi apparatus; cytosol; and nuclear speck. Colocalizes with plasma membrane. Implicated in Noonan syndrome (multiple); Noonan syndrome with multiple lentigines 2; adenocarcinoma (multiple); and dilated cardiomyopathy 1NN. Biomarker of colorectal adenocarcinoma; colorectal adenoma; and prostate cancer.

NR:

description
PREDICTED: RAF proto-oncogene serine/threonine-protein kinase isoform X3

GO: NA

KEGG:

id description
K04366 RAF1; RAF proto-oncogene serine/threonine-protein kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017214 True 1064 mRNA 0.54 9 50572116 50593081

Neighbor

gene id symbol gene type direction distance location
AMCG00017208 NA coding downstream 46113 50523558 ~ 50526003 (-)
AMCG00017203 NA coding downstream 116004 50447385 ~ 50456112 (-)
AMCG00017199 tamm41,LOC106583779 coding downstream 187547 50377265 ~ 50384569 (-)
AMCG00017200 vgll4,LOC107570332 coding downstream 220317 50331771 ~ 50351799 (-)
AMCG00017191 NA coding downstream 726990 49844467 ~ 49845126 (-)
AMCG00017215 LOC108254961,LOC107700631,LOC106571904,LOC106566758,LOC108431553 coding upstream 50329 50643410 ~ 50652954 (-)
AMCG00017213 rab43,LOC107700634,LOC107758163,LOC107675972 coding upstream 63038 50656119 ~ 50663669 (-)
AMCG00017216 NA coding upstream 77507 50670588 ~ 50671364 (-)
AMCG00017220 LOC107581369 coding upstream 83170 50676251 ~ 50679198 (-)
AMCG00017218 NA coding upstream 99519 50692600 ~ 50694191 (-)
G19137 NA non-coding downstream 1393 50568350 ~ 50570723 (-)
G19136 NA non-coding downstream 9200 50561023 ~ 50562916 (-)
G19081 NA non-coding downstream 240379 50329178 ~ 50331737 (-)
G19055 NA non-coding downstream 301459 50270408 ~ 50270657 (-)
G19049 NA non-coding downstream 381232 50187894 ~ 50190884 (-)
G19141 NA non-coding upstream 29100 50622181 ~ 50622439 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding upstream 44234 50637315 ~ 50638771 (-)
G19259 NA non-coding upstream 572277 51165358 ~ 51165675 (-)
G19316 NA non-coding upstream 702750 51295831 ~ 51296743 (-)
G19330 NA non-coding upstream 844799 51437880 ~ 51438093 (-)
AMCG00017178 NA other downstream 1077972 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 2077709 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 5410979 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 5915211 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 6912514 43633770 ~ 43659602 (-)
AMCG00017232 NA other upstream 591150 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 837606 51430687 ~ 51435239 (-)
G19335 NA other upstream 852506 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 1253515 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 2265259 52858340 ~ 52866435 (-)

Expression


Co-expression Network