AMCG00017216


Basic Information

Item Value
gene id AMCG00017216
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50670588 ~ 50671364 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017216
ATGATTGCCGGTCCGGGCTTAGCCATGCTACTCTTGCTCAGCCCATCCAGTGCCCAGACATGTCCCGACTCCTGCAGCTGCCTCTCcttaaaacctgctggatttaCCGTCAACTGCAGCTCCAGGGGCCTGACGGAGGTGCCCCCGCTGCCCCCGAGCACCACCGAGCTGCACCTGCAAAACAACCTGCTCACAACGGTGCCACCCGGGAGGTTCGACGGGCTCCAGGGCCTCGGGAAAATCAACCTCTCTGCCAACCCCTGGCACTGCGGCTGTGACATCGTCTACCTCAAAGCCTGGCTGGAGGACCAAGATGTCTCAGCTCACAGTGATGTGAGGTGCTTTTCACCGGCTACCTACAAACACAAGCCGTTACTGCAGCTCGGAGAAAAGGCCTTTTCCGCATGCGAACACAGTCAGTGCGTCTTGGTCTACAGGGATAAATTCATAATGGCTTTACTGTGTCTCCTACTCCTGCTGCTCTTGTGGAGTCTCACCGTTGTAAAGACGTCTCCTTTTATTGTTGACTTCGATCAGAGGCACAAAGGTATGGAAATGGAGTCTCTACAATCCCTGAAACCCAAGGACAAGAGAAGCGGACAGGCGTCCAGCAAGAGGCCGCCGGTCGGAGGGCTGGGGTACCAGAGCGCGGAGAGCGACGCGTTAGAGTGGACTGAGGAGAACGAGACgactgaacaaaaacacaacatggaACTTCTGCCTCAGATCTTAGACATACTGCAGAAGACGcacaatataaaaattaaaacaccttAA

Function

GO: NA

KEGG:

id description
K06263 GP9, CD42a; platelet glycoprotein IX

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017216 True 777 mRNA 0.54 1 50670588 50671364

Neighbor

gene id symbol gene type direction distance location
AMCG00017213 rab43,LOC107700634,LOC107758163,LOC107675972 coding downstream 6919 50656119 ~ 50663669 (-)
AMCG00017215 LOC108254961,LOC107700631,LOC106571904,LOC106566758,LOC108431553 coding downstream 17634 50643410 ~ 50652954 (-)
AMCG00017214 raf1,LOC106571905,LOC108427788 coding downstream 77507 50572116 ~ 50593081 (-)
AMCG00017208 NA coding downstream 144585 50523558 ~ 50526003 (-)
AMCG00017203 NA coding downstream 214476 50447385 ~ 50456112 (-)
AMCG00017220 LOC107581369 coding upstream 4887 50676251 ~ 50679198 (-)
AMCG00017218 NA coding upstream 21236 50692600 ~ 50694191 (-)
AMCG00017221 NA coding upstream 41624 50712988 ~ 50722221 (-)
AMCG00017219 iqsec1b,LOC107551128 coding upstream 60285 50731649 ~ 50753341 (-)
AMCG00017223 iqsec1b,iqsec1,LOC107566873,LOC107727750,LOC101485759 coding upstream 226749 50898113 ~ 50898373 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 31817 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 48149 50622181 ~ 50622439 (-)
G19130 NA non-coding downstream 48656 50531201 ~ 50621932 (-)
G19259 NA non-coding upstream 493994 51165358 ~ 51165675 (-)
G19316 NA non-coding upstream 624467 51295831 ~ 51296743 (-)
G19330 NA non-coding upstream 766516 51437880 ~ 51438093 (-)
G19516 NA non-coding upstream 1876373 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 1977644 52649008 ~ 52665182 (-)
AMCG00017178 NA other downstream 1176444 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 2176181 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 5509451 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 6013683 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 7010986 43633770 ~ 43659602 (-)
AMCG00017232 NA other upstream 512867 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 759323 51430687 ~ 51435239 (-)
G19335 NA other upstream 774223 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 1175232 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 2186976 52858340 ~ 52866435 (-)

Expression


Co-expression Network