AMCG00017220 (LOC107581369)


Basic Information

Item Value
gene id AMCG00017220
gene name LOC107581369
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50676251 ~ 50679198 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017220
TTATCACAGTATCTTTTCCACGGCAGGTCAGAAGTCTCCAAACTTCAGCTCCTTTCCAACAGCCCTGTGGAGCAGAAGCACAGCGGCGCCGGCCAGCGTGCCAGGAGGTGCTGCCTGACCACACAGCAGGACCGCCGGTCCCCGACTGGCCATGCAGAGCCGGTGCCTGACAATGTGGAGGAGCAGCTTTTCCGCTCCGTTGAAGGCCAAGCGGCCTCcgacgaggaggaggagaagtgGACTGGAGAGCAGCAGAGCCAGGTGGACGAGGTCAAGCGGATTCTCACCCGGCTGTCATGCTGTGGGGACAGGTGTGATGATAAAACGGTGAAGAAACTGCTCTCTCATTTCGGTGGCTCCACGAACGAGGAGAGCAGGAGTGCTGTGGTGGAGCTATTGGAGAAAGTCACCAAGCTGACCAAACAGCTGGAGATAAAGGAGATCCAGGCCAAGAAAGCAGAAATGGACATGGACCAGATAAAGGATTCGCTCGTGACAGAGCTCCGGCAGAAGGCCGAAGAGACTGAGTTGCTGCAGATGGAGCTCCAGATGTTGGAGACAGAGAGGGTGCGTCTGTCGCTGGTGGAGGAGAAGCTCATGGATGTCCTTCAGCTCCTGCAGCAACTCAGAGACCTGAACGTATCGAGAAGATCTCTGGGCAAGATCTTGCTGAGCACCCTGGAGTCCTGCAGCGACCCCCTGCATGGGAAAGCCCACATTCTGGAGGTGCTCAATGCTCTTTATCATGAATTGGCCGCTTGTGAGCTGCTGTCCAACTCCCCTCTGGAGAGGACGGCCAGCCACCCGTCTCTGTCGAACCCACTCCTCATCTCCTGCTGA

Function

NR:

description
PREDICTED: EF-hand and coiled-coil domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017220 True 840 mRNA 0.57 6 50676251 50679198

Neighbor

gene id symbol gene type direction distance location
AMCG00017216 NA coding downstream 4887 50670588 ~ 50671364 (-)
AMCG00017213 rab43,LOC107700634,LOC107758163,LOC107675972 coding downstream 12582 50656119 ~ 50663669 (-)
AMCG00017215 LOC108254961,LOC107700631,LOC106571904,LOC106566758,LOC108431553 coding downstream 23297 50643410 ~ 50652954 (-)
AMCG00017214 raf1,LOC106571905,LOC108427788 coding downstream 83170 50572116 ~ 50593081 (-)
AMCG00017208 NA coding downstream 150248 50523558 ~ 50526003 (-)
AMCG00017218 NA coding upstream 13402 50692600 ~ 50694191 (-)
AMCG00017221 NA coding upstream 33790 50712988 ~ 50722221 (-)
AMCG00017219 iqsec1b,LOC107551128 coding upstream 52451 50731649 ~ 50753341 (-)
AMCG00017223 iqsec1b,iqsec1,LOC107566873,LOC107727750,LOC101485759 coding upstream 218915 50898113 ~ 50898373 (-)
AMCG00017222 NA coding upstream 237210 50916408 ~ 50955842 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 37480 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 53812 50622181 ~ 50622439 (-)
G19130 NA non-coding downstream 54319 50531201 ~ 50621932 (-)
G19259 NA non-coding upstream 486160 51165358 ~ 51165675 (-)
G19316 NA non-coding upstream 616633 51295831 ~ 51296743 (-)
G19330 NA non-coding upstream 758682 51437880 ~ 51438093 (-)
G19516 NA non-coding upstream 1868539 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 1969810 52649008 ~ 52665182 (-)
AMCG00017178 NA other downstream 1182107 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 2181844 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 5515114 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 6019346 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 7016649 43633770 ~ 43659602 (-)
AMCG00017232 NA other upstream 505033 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 751489 51430687 ~ 51435239 (-)
G19335 NA other upstream 766389 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 1167398 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 2179142 52858340 ~ 52866435 (-)

Expression


Co-expression Network