AMCG00017221


Basic Information

Item Value
gene id AMCG00017221
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50712988 ~ 50722221 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017221
GTGACATAGTCTGCGCTGTGTCGTCATCAAAGTGCGACAGAAAGGGGTGAAAGGTTTTAGCAGGAGGAAATATTTGACAGAGACAGTTCAAGGGGAGAAGTTTAGTTTTTCTCCTATTGCAATGAATTTTAACGGACTGTTGAGGGTCTCCAAGTCGCTGAAATTGGGAAGGAGTGTATTAATGCCCCGAGTGGGACACAGAGCCAGTGAAGGCTGCAGACCATGCTGGCACAAGCAGCGCTTCTTCAGGACTGATTCGAGGCACATGACCTACGCCAAAGAGCTGTTCCTGGGCAGAGTAAACAAGAAGGAGGTGTTTCCATACCCAGAAATCAGCCAGGAAGAGCTGGACGAAATCAATCAGCTGGTGGCACCAGTAGAGCGTTTTTTTAATGACGATGTGGATTCCAAAAAGATCGACCACGAAGCCAAAATCCCTCCAGAAACGATGGCTGGGTTGAAGGAACTCGGGCTGTTTGGGATCCAGGTCCCTGAGGAGTACGGGGGGCTCGGGCTGTCTAACACAATGTATGCACGCCTGGGGGAGATCACGGCGTTGGACGCCTCCATCTCGGTCACGTTAGCAGCTCATCAGGCAATAGGACTGAAGGGAATTCTGATTGCTGGGAATGACACCCAGAAAGCCAAGTACCTGCCCAAGCTGGCCTCCGGGGAACACATCGCTGCCTTCTGCCTGACAGAGCCCGGGAGGTGGatttgGATTTCAAACGGTGGCATCGCTgatattttcacagttttcgCCAGGACTGAGGTGGTGGATGAAGAAGGCAACAGAAAAGACAAGATCACAGCGTTCATCGTGGAGCGAGCCCATGGGGGGGTCACCAGCGGGAAGCCCGAGGACAAACTGGGCATCCGGGGGTCCAACACCTGTGAACTCACGTTTGAAGACACCAAGGTGCCCGTAGAAAATGTAATCGGGGAAGTCGGAGGTGGATTTAAGGTCGCTATGAACATCTTAAACAGTGGCCGATTCAGCATGGGCGGTGCCTGTGCCGGAATGATCAAGAAGCTCATCGGGCTCACGGCGGAGTATGCAGGGACCCGCAAACAGTTCGACAAGAGTCTCAGCGAGTTCGGGATGATTCAGGAGAAGTTTGCTCTGATGGCTCAGAAAGCGTTCGTGATGGAGAGCATGGCCTACCTGACCGCAGGCATGATGGACCGCCCGGGTGTGCCCGACTGCTCGGTGGAGGCAGCCATGGTGAAGGTGTTCAGCTCGGAGGGAAGCTGGCTGTGTGTCAGCGAGGCCCTGCAGGTGCTGGGGGGTCTGGGCTACACCAAGGATTACCCCTTCGAGCGCTACCTCCGAGACTGCCGCATCCTGCTCATTTTTGAGGGTACCAACGAGATCCTGAGGATGTACATAGCGCTGACGGGAATGCAGTACGCCGGCAAAGTTTTGACAGGAAAAATAAAGGAGATGAAAAAAGGTAACATTGGAGTCGTGATGGAGATGTTTGGGAAGAAGCTGCGCGACTCTTTCACAAGGAAGGTTGATTTGGGGCTGACGGGTAACGACGGCGTGGTGCACCCCAGCCTGGCGGACAGCACTAAGAAGCTTGAGGAAAACGTGCATTATTTTGGTGTAACAGTTGAAAGTTTACTCTACAGATATGGGAAGACCGTCGTCGATGAGCAGCTGGTTCTGAAGCGAGTGGCCGACATCGTTATCAACCTGTATGCGATGACCGCGGTTCTGTCCAGGGCGAGTCGCTCCATCAGCATCGGCCTCCGCAACCACGACCACGAGGTATTACGATCCGCAACGCGGCTGTGCTCCTGGGCTTTTCCTACCAAAGTCATCACGGCTTTTCCGAGGAGCAGTCGGTCGTCCTACGTTAAGCTCTAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K15980 ACAD9; acyl-CoA dehydrogenase family member 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017221 True 1873 mRNA 0.54 15 50712988 50722221

Neighbor

gene id symbol gene type direction distance location
AMCG00017218 NA coding downstream 18797 50692600 ~ 50694191 (-)
AMCG00017220 LOC107581369 coding downstream 33790 50676251 ~ 50679198 (-)
AMCG00017216 NA coding downstream 41624 50670588 ~ 50671364 (-)
AMCG00017213 rab43,LOC107700634,LOC107758163,LOC107675972 coding downstream 49319 50656119 ~ 50663669 (-)
AMCG00017215 LOC108254961,LOC107700631,LOC106571904,LOC106566758,LOC108431553 coding downstream 60034 50643410 ~ 50652954 (-)
AMCG00017219 iqsec1b,LOC107551128 coding upstream 9428 50731649 ~ 50753341 (-)
AMCG00017223 iqsec1b,iqsec1,LOC107566873,LOC107727750,LOC101485759 coding upstream 175892 50898113 ~ 50898373 (-)
AMCG00017222 NA coding upstream 194187 50916408 ~ 50955842 (-)
AMCG00017228 wnt7a,LOC107749431,LOC107685644,LOC107727836,LOC108424657,LOC107691337 coding upstream 417617 51139838 ~ 51155195 (-)
AMCG00017233 phf2,LOC102794927 coding upstream 576139 51298360 ~ 51327317 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 74217 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 90549 50622181 ~ 50622439 (-)
G19130 NA non-coding downstream 91056 50531201 ~ 50621932 (-)
G19259 NA non-coding upstream 443137 51165358 ~ 51165675 (-)
G19316 NA non-coding upstream 573610 51295831 ~ 51296743 (-)
G19330 NA non-coding upstream 715659 51437880 ~ 51438093 (-)
G19516 NA non-coding upstream 1825516 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 1926787 52649008 ~ 52665182 (-)
AMCG00017178 NA other downstream 1218844 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 2218581 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 5551851 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 6056083 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 7053386 43633770 ~ 43659602 (-)
AMCG00017232 NA other upstream 462010 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 708466 51430687 ~ 51435239 (-)
G19335 NA other upstream 723366 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 1124375 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 2136119 52858340 ~ 52866435 (-)

Expression


Co-expression Network