AMCG00017222


Basic Information

Item Value
gene id AMCG00017222
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50916408 ~ 50955842 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017222
CGGGTATTTCTTATCAGTATAATAAGCTAAAACGAATAATGCGATTATTTAAGCACGTTTCTGTAGGTTAGGGACCGCTGGACGTCTTTTTGTATGCGATAGAAACtatttcctttgtgtgtgtgtgtgtgtgtgtgtgtagtgaagCACTGTTGGCACTGGCTGAGGGTCCTGCAGCGGCTCCCCACGCTGGGCATCTTCTGTTGTGAAACTTTGCATCGCTCAACTGGATGCATTCAATTATAACTTCCAAACAGCGTTTTTACAGACAGATCCGCTCATTAATACCAGCATCCAGGCGTTTGTTGAATGCGTTTAACATGCTTGTTTCACTTTCCATACATCCACACAGTTGTATGAGGAGTCTTGTCGTATAAGGGAAGTGGCGTCAGAACACATACCAATTAAACGATTTGGCTGCTCTAATTCAGCTCCATTtcaattcatttgttttatgtttcatagatatagatgcatatataaagagagagcgATACCCGGATGCTGCTTCAACTTTCGGTTTACCTGAACTACAGTCTCAGAAAAGGAAATGGCGAGAATTAAACTActttcattgattttatttttggttgcaTTGCCCTCTTGCATTTACTGTTCGAGTGCCTCCAAACTGAATATCCCAAAGGTGTTACTACCTTTAGCCAGGAGCACAAAAATCAATTTTACACTGGAAGTAACGGAAGGATGTTACAGATGGTCTTCCACCAGACCTGAGGTGGCCAGTATTGAAGTTGTTGACCTGGATGAACGTCACTGTTCTCAAAGAGCGGTTCTGCAGGCACGCTCTTCCCAACCTACTCGACTGACCAGTATTATACTTGCAGAAGACGTTTTAACTGGGCAGGTTCTCCGCTGTGACGCCATCGTGGACATTATCAGCGAGATTCAGATCGTGTCCACCACTCGAGAGCTGCACCTGGAGGACTCTCCCCTGGAGCTGAAGATCCACGCGCTGGACTCGGAAGGAAATACTTTCAGTACCTTGGCAGGACTCGTTTTTGACTGGACCATAGTGAAAGATGCAGAAACCTCCAGTTTCTCAGACTCCTACAATGCACTGCGggTGCTCAAGTTCTCAGAATCTACATACACTCCTCCGGCCTACATATCAGAAATGGAGAAAGTCGGAAAGCAAGGAGACATAATTTTGGTGTCGGGAATGAAGACGGGAAATTCCAAACTCAAAGCCAAGATACAGGAGTCGTTGTACAAGAATGTTCCGGCTGCGGAAGTAAGACTTCTGATCTTAGAAAACATACTTCTGAGCCCTGCATATGACATCTACTTACTGGTGGGAACGTCCATTCAGTATAAAGTGCAGAAGATTCGGCAAGGAAAGATTACAGAGTTGGCGATGCCCTGTGATCAGTACGAGCTCCAGCTACAGAACAGCGTGTTGGGACCGGACGGGGACGCCAGCCTGCCGGTGGCAAAACTGCACCGAGCCACGTCCACCGTCACCGCTTTCCAACATGGCCAGACCAACATAGTCCTCGACCACAAGAGTCTTCGTATGCAGGGTGCTTCTAGATTACCAAACAGCACTTTGTACGTCGTGGATCCCGGGTATTTAGgATTTAAAATTCAGCCAGGTGACAGATGGGTCCTTGAAACGGGAAGAATGTATGAAATCCTCATTGAAGTGTTCGATAAATCGAGCAATAAGATACATTTGTCCGATAACATCCGGATCGAAGCGGCGTTTCCCAAGGAGTATTTCAAGGTGCTGGAGTCATCTCTGAACGGCTCGTACCACCGAGTGAAGGCCCTGAAGAAGGGGCAGACGGGGATCGATGGGGCGCTCACATCGGTGGTCGACCAGGATGGAGGAGTGCATGTTTTCCCCATTCCAGTCCGCAACCAACAGGATGTCGAAATTTATAATCCCATAGTACTGACTCCAAGAATTTTAACATTCCCATGGCAACCCAAAGTGGGAGCGTATCAGTACACAATAAAGGCCGATGGAGGCAGTGGGAACTTCACCTGGTCCTCCTCCAATCAAGCTGTGGCGACGGTGACCGTTAAAGGAGTTATGACAACTGTCAGCGATATAGGCATCAGCGTTATACAGGCGCATGACGTTCAAAACCCCTTGCATTACGGAGAGATGAAGGTCTATGTGATTGAACCGATTGTGATGGACTTCACTCCATGTCAAGTTGAGGCCCGGGTCGGCCAAACACTAGACCTTCCTCTCAGGATATTTGGCCTCCTCAACGTGGAGACCAATGAACGGGTCACACTCAGCGACTGCTCCCATTTTGACTTGGCTGTGGAAGTCGAGAATCCAGGGGTCTTCAAGCTCTTGGAAGGGAGACTGAGGCCAGGCCAGGACTACTGTAGTGGTGTGACTGTGCAAGCTGTGGCCCCCGGCTACACCCCCCTGCTCGCAATAGATCCGGTTTCTGTTGCCCTTGTGACGCTGGGCTCATCTAAAGACATGCTGTTTGAAGGAGGACCGAAGCCATGGGTTCTGGAGCCGTCCAAGTTCTTCAGGAACCTCACAGCTGAGGACACGGACAGCGTCAGCCTTGCACTGTTTGGGCCCGCGTCTCGAAACTACTTCCAGCACTGGGTTAGAGCCACCTGCAGAGCACTGGGGGAGCAGGTTCTGGCCGTGACTGTGGGGAACCAGCCCAGCTTGACGAACCCCTTCCCTGCAGTGGAGCCCGCCGTGGTGAAGTTCGTGTGTGCCCCCCCGTCCCGCCTCACGCTGGTGCCCGTTTCCAACTATCGCAACCCTGTGTTGGACCTGGCAGCCTACGACCAGCAAGGACGCAAATTTGATAACTTCAGTTCCTTGAGTATTTTCTGGGAGTCAACGAAGGTCTCCTTAGCCAGTATCGAGCCCACAATGCCGATGGAGCTGTCTGTGAAGGAGGACAGACACGGGCAGAAGAAGCTACATGGTCGTCAGACGGTGCTGGTGCATCGCGCGTCTGGGATCACAGCCATCACAGTGTCGGCCACTGGATACCAGGTTTCTCACCTCAACGCAGCGAAAGTGAACAGTCCGTATGACCCCCTATCTCCAGTGTCTGCTACCCTTGAGCTCTTGCTGGTGGAAGATGTGAAAGTTTTTCCCGAAGCCATCACTATATATAACCACCCAGACGTGCGGGCGGAACTGGCGTTCAGGCAGGGCTCGGGGTATTTTTTTGTCAACACGAGCATTGCAGGTGTTGCAAACATTGCCTACCACGAATCAAAGGGAACAGCAGAGGTGGAAATTGGAAAGTCTGTGAAAGCTCACGTGAGAGTGTTAGACGATAACAAGAGACCCTTCTTGGCTAAATATTTTCCCTAcatgaatttgaaattaaaggcTGCATCTCCAATTATTTCTTTGttACCCCTCTCAGAATCGTCAGAAAATGATACGGCCACATTCCTAGTTCAAGGTTTAACGATCGGACAGACCAGTCTATCTGCGGTGGTGCTGGACAAAAGTGGGAAAAGAATAAATTCGGCTCCACAGCAAATTGAAGTATTTCCACCTTTCAGACTGATACCGAGGAAAGTAACGTTGATTATCGGTGCAATGATGCAGATTACTTCTGAAGGAGGGCCACAGCCCCAGTCTAATATTATCTTTTCAATGGGCAATGAGAGGATAGCGTCAGTAAATGGTATCGGCCACATCCGGGGGATTGCGGTTGGAAACGCGACGGTGACAGGAGTCGTACAAGCCGTGGACGCCGAGACGGGAAAGCTTGTTGTTGTGTCTCAGGATCAGGTAGACGTCGAGGTCGTGCAGCTGAAGGCGATCCGAATCCGCGCCCCCATCACTCGGATGAAGAGCGGGACCCAGATGCCTGTGTATGTCATGGGTATCACCAGCAGTCAGACTCCGTTCTCCTTCGGCAATGCCGTGCCGGGCCTGACTTTCCACTGGTCCGTCACCAAGAGAGACATACTGGACATCGAGACCCGCCATTCAGAGGCATCCCTGCTACTCCCTGCAGAAAACAATTTTGCTATGAATGTGCACGGGAGAACGAAGGGGAGAACGGGCTTGAAGGTTGTGGTGAAGGCTGTAAATCCAGCCTCTGGGCACCTGGAAGGCAATGTGAAAGAGTTCTCAGATGAAATACAGATTCAGGTTTACGAGAAGTTGTACTTACTCAACCCAGAGGTCCAGGCGGAGGAGATATTGATGTCTCCAAATTCGGTACTAAAACTTCAGACCAACAGGGACGGTGTTGGGTCCCTCACGTACCGCGTGCTGGACTGTCCGGAAAAGGCCGCGTCCATCCAGGTGGACGAGAAGGGCCTGCTGTCCTCTGGGTCGCTCACCGGCACGTCCTCCCTCGAAGTCACTTCCCAGGAGTACTTTGGAGTCAATCAGACGATTATTGTGGCCGTAAAGgtAGTTCCAGTCTCCTACCTGAGGTTCAGCACCAGTCCTGTGCTTTATACCGCAAATAAGGAAACCCTCACTGCTCTTCCTCTGGGAACAACCCTTACGTTCACCGTACACTTCCACGACAGCACCGGGGATGTCTTCCACGCCCATAACTCGCTCCTGACCTTCGCCACAAACAGAGATGACCTTGTACTGGTTGGAAAAGGGCAGAGTAACAACACGTTTGTCGTGCGGACGGTCAACGTGGGCCTCACCCTGCTGGGCGTGTGGGACTCAGAGCAAACCGGAGTGGCTGACTTCGTGGCCTTGCCGGTGCAGCACGCCATCCACCCTGAGGAGTCGGAGACGCTGGTGGTCGGTGATGTCATCTGCTTTAGCACGCTACTCGTTAATCAAGAAGGTGCTACAGGAACGTGGTCTTCCTCTGGGAGCATCCTGCAGGTCGATCCAAGGACGGGAGCAGCCGTGGCCAGAGATTCGGGATCTGTCACCATTTATTATGAGATCCCCGGCCAGCTGAAAACCTACAGAGAGGTGCTGATTGCCGGCGCTGCGAGGACGATGGTCATGACGCACACAGGCACGGCGAAGAGCGCGGGAGGAGAGAGCGTGTCCCGAGTGCTCGTTACCACCCGGGAAAAAGGCACCAATTTAATAGGCCAGTGTTCGCCAGCTCAGATCGAAGCCATCGCCGAGCTCAGCCCCCAGTCGAGCATCGGCTGTCAGCTCCAGTTCAGCAGCGAATCGATTGACTTCTCCGCCCACGACGTGTTCGCCACGCAGACGGGATTCGATACGAGCACAGGTTTCTACTCGTGTGCGTTCAACATGCAGCAGCTGAGTGACCAGCAGCTGAAGGCCCTCAGCATGACCAGGACGGGGGTCATTGTCAAAGCTGCCGTCCAGGGGAGCCACTTCTCCGGAGAGCAGCTGGGCGCCCAGGTGCCCTTTAACCCCGGCTTCTACGCTGACCAGAATGACATCCTCCTGAGCAACCAGCACCCCGCCACCGACGTCACGGTGTACGGAGACGCGGAGGTCCTCGGCCGCCTGGAGGTGACCACTAGCTCCCCAGTCATCGTCATCCAAGAGAAGGAGGTCTCCTATGGGTTTCCGAGCTTCGTGAAATACACGGTCAGCATCTCCGACCCCCGCCTCGTGACTCAGGGGGCCATAGCGGCCAGGATCTCCATATCGAGCCCCCAGACCGACCAGGCCATCGGCATCCCTGTGACCGTGATGCACGTCACCGATCGAAGCACGGCCATGCAAGCCGGGGCCCCGCTGGCCGGCTCCTGGGAGAGCGCAGGTCTGTTCCAGCAGTTCATCGACTCCTATCAGGTGATGTTCTTCACGCTGTTCGCCCTGCTCGCCGGCACGGCCATCATCATAATTGCCTGCCATGCATTTTTCTCACCAAGGGAGCAAGTTTATCACCCTGCGTTTGTCCAGAGGACTCCTTCTCACCCAGGTTATGGTTCGCCTGCCTTAAGCCCCTTCAACAGTACAGTCCCGTCCGACTTGAGAAGCAGCCCGAAGCTGCGGCTCTTCACCCCCGACTACCCCCCCGACTCGCGATAAGAGTCTCCGGTGGCGCTGTGAGGAATGTGAAGGGCTTTCGACCCTGTATTTAAAGCCAAGGACTGAAAGTGCCTTTCTCATGACATCTGAAATGTCCGGGGGTCCGTTTTTCTCCTCTGTTTTAAAATCCCCTCCCTATTTTGCATACGTTGcatcaaatgtattaatcttaAAATGGTGCACGTTATTTACTAACTGGACAGTTAGCAATTGAACTGTTTTTGACTAATCctacaaaacaaataagcatGTTTGTGAAGCCTAATGCAATCCCGCCTtgagttttgttgtttgtgtggtacattttttgttgaatAGTAATTTAGATTTTACTTCATTTGAATGGCTTTGCaatatttgacatttgtttcattttaccATTTACCATTTATGAACATTTACCAAACCTTTTTTCCGATATGTGGTTCTAAAAGAAACTTTACAATGTGACTAAGACTTATTTGACGTTAAACGCTGGTTGTGATATAACTCAGGAACTTAATGCACTGAAGTCCAATATGGTGCAAACTTTCAAAAGCAGGCGCGCCAGATCGTAATATTGTGTGTAAATAGTTGAGaatgctttgatttatttttgtattgcggtgaatattattttcagtgatgTGAGTAATGTGAAAGCTCAATCCATCCGTAAATGgctcagtttatttaaaaataataatgtgatattaGTAAACGCCAGAGCAAAGGTAAAGTAACACAAGCGTTTTGTGAAATtcaaaccaaatcaaatctaaGTGTTATTTATGTTCCATTCTGGTGAGTTTGGCAACCTGTAAGAGGAGAGAATTTCCTCGATGCCTTAACAGTATACCTCGTGAATTGTCGAGCCCGAATCGCAGCTATTTTCCGTGTGTGAAATCTGGTAATGTGAACGTTTGAACTGTGAGTCCTTGTCTCTCGCTCTTCTCCTGTCCATGTCCACTAGACACGCCTATAACAAGAGACGAGCAAAGCTAACATGAAGAAACCGCTTCTTGAACGAGCCTGTCATTGTGCCAGTCGATATATTGGAAAAAAgttatacaataaatatattctgtCCAGTTTAAACTGTCTGTACTAATGTAACTTAAAAGCCTGCCAAGACCCGAAGTGTTGGATTTAAGTCTGAATTGTTGGAAAAAGGTGAATTGTGTACTTATCAGAGCCAACATTGTTGGCATTTCAATGGATATTGTGTTCATAATAGTTTCATTTTTAGATCTGCATGCATGAAAAAccaacagctgtgtgtgtgaagcacTTAaaccgatttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K14314 NUP210, GP210; nuclear pore complex protein Nup210

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017222 True 7282 mRNA 0.50 39 50916408 50955842

Neighbor

gene id symbol gene type direction distance location
AMCG00017223 iqsec1b,iqsec1,LOC107566873,LOC107727750,LOC101485759 coding downstream 18035 50898113 ~ 50898373 (-)
AMCG00017219 iqsec1b,LOC107551128 coding downstream 163067 50731649 ~ 50753341 (-)
AMCG00017221 NA coding downstream 194187 50712988 ~ 50722221 (-)
AMCG00017218 NA coding downstream 222217 50692600 ~ 50694191 (-)
AMCG00017220 LOC107581369 coding downstream 237210 50676251 ~ 50679198 (-)
AMCG00017228 wnt7a,LOC107749431,LOC107685644,LOC107727836,LOC108424657,LOC107691337 coding upstream 183996 51139838 ~ 51155195 (-)
AMCG00017233 phf2,LOC102794927 coding upstream 342518 51298360 ~ 51327317 (-)
AMCG00017235 fam120a,LOC107685640,LOC107691381,LOC107581418 coding upstream 388517 51344359 ~ 51363221 (-)
AMCG00017236 LOC105024957,LOC106571792 coding upstream 409347 51365189 ~ 51411576 (-)
AMCG00017239 NA coding upstream 507671 51463513 ~ 51476059 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 277637 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 293969 50622181 ~ 50622439 (-)
G19130 NA non-coding downstream 294476 50531201 ~ 50621932 (-)
G19259 NA non-coding upstream 209516 51165358 ~ 51165675 (-)
G19316 NA non-coding upstream 339989 51295831 ~ 51296743 (-)
G19330 NA non-coding upstream 482038 51437880 ~ 51438093 (-)
G19516 NA non-coding upstream 1591895 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 1693166 52649008 ~ 52665182 (-)
AMCG00017178 NA other downstream 1422264 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 2422001 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 5755271 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 6259503 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 7256806 43633770 ~ 43659602 (-)
AMCG00017232 NA other upstream 228389 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 474845 51430687 ~ 51435239 (-)
G19335 NA other upstream 489745 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 890754 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 1902498 52858340 ~ 52866435 (-)

Expression


Co-expression Network