AMCG00017228 (wnt7a,LOC107749431,LOC107685644,LOC107727836,LOC108424657,LOC107691337)
Chromosome Information
Item |
Value |
chromosome id |
CM030122.1 |
NCBI id |
CM030122.1
|
chromosome length |
54868152 |
location |
51139838 ~ 51155195 (-) |
genome version |
AmiCal1_2021_bowfin_Genome |
Sequence
>AMCG00017228
TCAGTATCCACTTTAATTTAAGGAGGAACCTTTCCTTCCCCAAAGTGGCATCTGTCCCTCCCGTCAATGCGATCCGCggccacagacagacatactGCGCATACAATGCACAAGATCAATCAATTCAAATCAAAAAGAACATCTTTCTAAGACCCTTCAGGCCgactatttattaaaacacagtgGCTTAATGGTTGCAGCTTTGCACGACACAGATGCCGCGCTGACTGGGACAGGACAGCACAGCTGGCACCGCGGCCGGGGAGCGCAGAGCCGGCGATGCTTGAGCCCTGGAGACTGCTGACCCACAGGTGAATGGGACTGCAGACGAGAACACGCCCTGGTGGAGGAGGTAGATATAGAGGACCTGCGGAAGAGCTGGCACTGTCTGTGGGCTGGAGATCTGCACGGCACTAACGCAGGGACATCTGCCGAGTTACCTGTGGCATCTCACTGGGAGAGGCGCCGGACACTACCGCTCCTGTGATTCACACTGGGATGTACAAATAGCACTGCCGGCGTGTGTCGTGTCTATACACCCTGATCTGGAGGTAATCGGCCTGGGACTAGACAGTCAAGAGTCTgcaatagtattttttttgctACACACAACATTGGAAAAGGGCAGCACCATGAACAGGAAGACGCGACGCTGGATTTTCCATATCTTTCTGTGCCTGGGGATTGTGTATCTCAAAATTGGGGGCTTCTCCTCCGTGGTTGCGTTGGGAGCGAGTATAATCTGTAACAAGATCCCAGGTTTGGCCCCTCGACAGAGGACTATCTGTCAGAGCAGACCTGACGCCATCATCGTGATTGGGGAGGGGGCCCAAATGGGAATCAACGAATGTCAGTTCCAGTTCAAAAACGGACGCTGGAACTGCTCAGCCCTGGGGGAGAGGACGGTCTTTGGAAAAGAGTTGAAAGTGGGAAGTAAAGAGGCAGCATTCACCTATGCCATCATAGCAGCTGGCGTCGCCCATGCCATCACCGCTGCCTGCACCCAGGGCAACCTGAGCGACTGCGGCTGCGACAAGGAAAAGCAGGGATTTTACAACCAGGAGGAAGGCTGGAAATGGGGTGGCTGTTCTGCGGACATCCACTACGGCCTGAGATTCTCCAAGGTGTTTGTGGACGCCAGGGAGATCAAGCAGAACGCGAGGACGTTAATGAATCTACACAATAACGAAGCGGGACGCAAGATACTGGAGAAGAACATGAGGTTAGAGTGCAAATGTCATGGGGTGTCGGGGTCGTGCACGACCAAGACCTGCTGGACGACTCTGCCCAAGTTCCGAGAGCTGGGCTACATCATCAAGGACAAGTACAACCAGGCCGTCCACGTGGAGCCCGTGAGGGCGAGTCGCAACAAGCGGCCCACTTTCCTTAAGATAAAAAAGCCGCCTTCCTATCGCAAGCCCATGGATACAGACTTAGTATACATCGAGAAATCACCCAACTATTGCGAGGAGGACCCAGTGACAGGCAGTGTAGGAACACAAGGCCGAATATGTAATAAAACAGCCCTGCAGGCCAACGGCTGCGACCTCATGTGTTGCGGCCGAGGCTACAACACGCACCAGTACTCGAGAGTGTGGCAGTGCAACTGCAAGTTCCTGTGGTGTTGCTACGTTAAGTGCAACACGTGCAGTGAAAGAACAGAAGTCTACACGTGTAAATGAGATCTTTATACGATccccacacacagccacacacatgCAGAAGTTGTGAGTCCGtgtgtgttcattatttttctgatgGGGTTCTGTTTTGGTCCCCtggaaaactaaacaaactaaacacTTCATTTGGACTCCAACGTATGAGCTGCAGTCGGCAACGGATGACTTTCCCTCCGCTAGAATGGAAATCCACCGAGTCCCTTTGCTGTGTGCAGGGCTGTGTCAAGACAAACGGCATTGACAAACACTCAAGGGAAAAGACGACGTAATGTTCTCGAGGACAGAATATATTATTGCAGCTGACATGGACCGAGAGAACAGTGGCTTTGCAGAGTAAGAGACTTATGGTAAAAACGCAGACCTCCGATGGGAACCTCAATGCCGGCAGGTTAACAGTGTCCCTGGTGCTTTCACTGTGGATTATGCAGATGGAGGGTTTTTGACGTCTTTTACTCTATTTGACAGGATCGCATATGGATTGACTACAAATGTAACTGTTCAGTTTCCACTAGAGCCCAGATCAccactatatatttatatttatatagtgatggtccaggattttgttttttaacccgCACGTACATTTTTGGGGACTTGTTTGGAGGACAATTGGGACATTTTGGcatgattttaaattgaaactgtaattgcaatatttaacatattatttagataaaaacaacaaatattaatttatttcattaactACTGATTTTTTTACGGGACTATCCTACATTGAGAGTAGATAGTAGGATTTCCTCGTGGAGCATTTTTTGTTGGTATTGTTTATAAATGTAGcaaagatgacaaaaaaaacaatacactggATCTGTATATAATAGGTCTTTATCAGATACAActgatacatttataaatatatgtatgtgtgtgtgtatatatttacacacatacagctctggaaaaaattaagagaccacttaacattgatttctg
Function
symbol |
description |
wnt7a
|
Enables cytokine activity. Involved in several processes, including cartilage development; embryonic limb morphogenesis; and regulation of synapse assembly. Is active in glutamatergic synapse. Implicated in Fuhrmann syndrome and Schinzel type phocomelia. Biomarker of leiomyoma.
|
NR:
description |
PREDICTED: protein Wnt-7a |
GO:
id |
name |
namespace |
GO:0030182
|
neuron differentiation |
biological_process |
GO:0046330
|
positive regulation of JNK cascade |
biological_process |
GO:0045165
|
cell fate commitment |
biological_process |
GO:0016055
|
Wnt signaling pathway |
biological_process |
GO:0005615
|
extracellular space |
cellular_component |
GO:0005109
|
frizzled binding |
molecular_function |
KEGG:
id |
description |
K00572
|
WNT7; wingless-type MMTV integration site family, member 7 |
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
AMCG00017228 |
True |
2639 |
mRNA |
0.48 |
4 |
51139838 |
51155195 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
AMCG00017222 |
NA
|
coding |
downstream |
183996 |
50916408 ~ 50955842 (-) |
AMCG00017223 |
iqsec1b,iqsec1,LOC107566873,LOC107727750,LOC101485759
|
coding |
downstream |
241465 |
50898113 ~ 50898373 (-) |
AMCG00017219 |
iqsec1b,LOC107551128
|
coding |
downstream |
386497 |
50731649 ~ 50753341 (-) |
AMCG00017221 |
NA
|
coding |
downstream |
417617 |
50712988 ~ 50722221 (-) |
AMCG00017218 |
NA
|
coding |
downstream |
445647 |
50692600 ~ 50694191 (-) |
AMCG00017233 |
phf2,LOC102794927
|
coding |
upstream |
143165 |
51298360 ~ 51327317 (-) |
AMCG00017235 |
fam120a,LOC107685640,LOC107691381,LOC107581418
|
coding |
upstream |
189164 |
51344359 ~ 51363221 (-) |
AMCG00017236 |
LOC105024957,LOC106571792
|
coding |
upstream |
209994 |
51365189 ~ 51411576 (-) |
AMCG00017239 |
NA
|
coding |
upstream |
308318 |
51463513 ~ 51476059 (-) |
AMCG00017240 |
NA
|
coding |
upstream |
341024 |
51496219 ~ 51525354 (-) |
G19150 |
isy1,LOC108431508,LOC107700632,LOC108254962
|
non-coding |
downstream |
501067 |
50637315 ~ 50638771 (-) |
G19141 |
NA
|
non-coding |
downstream |
517399 |
50622181 ~ 50622439 (-) |
G19130 |
NA
|
non-coding |
downstream |
517906 |
50531201 ~ 50621932 (-) |
G19259 |
NA
|
non-coding |
upstream |
10163 |
51165358 ~ 51165675 (-) |
G19316 |
NA
|
non-coding |
upstream |
140636 |
51295831 ~ 51296743 (-) |
G19330 |
NA
|
non-coding |
upstream |
282685 |
51437880 ~ 51438093 (-) |
G19516 |
NA
|
non-coding |
upstream |
1392542 |
52547737 ~ 52548050 (-) |
G19548 |
NA
|
non-coding |
upstream |
1493813 |
52649008 ~ 52665182 (-) |
AMCG00017178 |
NA
|
other |
downstream |
1645694 |
49487197 ~ 49494144 (-) |
AMCG00017158 |
NA
|
other |
downstream |
2645431 |
48489127 ~ 48494407 (-) |
AMCG00017105 |
srgap3
|
other |
downstream |
5978701 |
45118290 ~ 45161137 (-) |
AMCG00017091 |
brk1,BRK1,LOC106565571
|
other |
downstream |
6482933 |
44653455 ~ 44656905 (-) |
AMCG00017067 |
sumf1
|
other |
downstream |
7480236 |
43633770 ~ 43659602 (-) |
AMCG00017232 |
NA
|
other |
upstream |
29036 |
51184231 ~ 51212373 (-) |
AMCG00017234 |
LOC100690894,LOC102799047,LOC102206238
|
other |
upstream |
275492 |
51430687 ~ 51435239 (-) |
G19335 |
NA
|
other |
upstream |
290392 |
51445587 ~ 51449786 (-) |
AMCG00017251 |
actr8
|
other |
upstream |
691401 |
51846596 ~ 51860267 (-) |
AMCG00017292 |
tusc2,LOC108433681,LOC104930950
|
other |
upstream |
1703145 |
52858340 ~ 52866435 (-) |
Expression