AMCG00017228 (wnt7a,LOC107749431,LOC107685644,LOC107727836,LOC108424657,LOC107691337)



Basic Information


Item Value
gene id AMCG00017228
gene name wnt7a,LOC107749431,LOC107685644,LOC107727836,LOC108424657,LOC107691337
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51139838 ~ 51155195 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00017228
TCAGTATCCACTTTAATTTAAGGAGGAACCTTTCCTTCCCCAAAGTGGCATCTGTCCCTCCCGTCAATGCGATCCGCggccacagacagacatactGCGCATACAATGCACAAGATCAATCAATTCAAATCAAAAAGAACATCTTTCTAAGACCCTTCAGGCCgactatttattaaaacacagtgGCTTAATGGTTGCAGCTTTGCACGACACAGATGCCGCGCTGACTGGGACAGGACAGCACAGCTGGCACCGCGGCCGGGGAGCGCAGAGCCGGCGATGCTTGAGCCCTGGAGACTGCTGACCCACAGGTGAATGGGACTGCAGACGAGAACACGCCCTGGTGGAGGAGGTAGATATAGAGGACCTGCGGAAGAGCTGGCACTGTCTGTGGGCTGGAGATCTGCACGGCACTAACGCAGGGACATCTGCCGAGTTACCTGTGGCATCTCACTGGGAGAGGCGCCGGACACTACCGCTCCTGTGATTCACACTGGGATGTACAAATAGCACTGCCGGCGTGTGTCGTGTCTATACACCCTGATCTGGAGGTAATCGGCCTGGGACTAGACAGTCAAGAGTCTgcaatagtattttttttgctACACACAACATTGGAAAAGGGCAGCACCATGAACAGGAAGACGCGACGCTGGATTTTCCATATCTTTCTGTGCCTGGGGATTGTGTATCTCAAAATTGGGGGCTTCTCCTCCGTGGTTGCGTTGGGAGCGAGTATAATCTGTAACAAGATCCCAGGTTTGGCCCCTCGACAGAGGACTATCTGTCAGAGCAGACCTGACGCCATCATCGTGATTGGGGAGGGGGCCCAAATGGGAATCAACGAATGTCAGTTCCAGTTCAAAAACGGACGCTGGAACTGCTCAGCCCTGGGGGAGAGGACGGTCTTTGGAAAAGAGTTGAAAGTGGGAAGTAAAGAGGCAGCATTCACCTATGCCATCATAGCAGCTGGCGTCGCCCATGCCATCACCGCTGCCTGCACCCAGGGCAACCTGAGCGACTGCGGCTGCGACAAGGAAAAGCAGGGATTTTACAACCAGGAGGAAGGCTGGAAATGGGGTGGCTGTTCTGCGGACATCCACTACGGCCTGAGATTCTCCAAGGTGTTTGTGGACGCCAGGGAGATCAAGCAGAACGCGAGGACGTTAATGAATCTACACAATAACGAAGCGGGACGCAAGATACTGGAGAAGAACATGAGGTTAGAGTGCAAATGTCATGGGGTGTCGGGGTCGTGCACGACCAAGACCTGCTGGACGACTCTGCCCAAGTTCCGAGAGCTGGGCTACATCATCAAGGACAAGTACAACCAGGCCGTCCACGTGGAGCCCGTGAGGGCGAGTCGCAACAAGCGGCCCACTTTCCTTAAGATAAAAAAGCCGCCTTCCTATCGCAAGCCCATGGATACAGACTTAGTATACATCGAGAAATCACCCAACTATTGCGAGGAGGACCCAGTGACAGGCAGTGTAGGAACACAAGGCCGAATATGTAATAAAACAGCCCTGCAGGCCAACGGCTGCGACCTCATGTGTTGCGGCCGAGGCTACAACACGCACCAGTACTCGAGAGTGTGGCAGTGCAACTGCAAGTTCCTGTGGTGTTGCTACGTTAAGTGCAACACGTGCAGTGAAAGAACAGAAGTCTACACGTGTAAATGAGATCTTTATACGATccccacacacagccacacacatgCAGAAGTTGTGAGTCCGtgtgtgttcattatttttctgatgGGGTTCTGTTTTGGTCCCCtggaaaactaaacaaactaaacacTTCATTTGGACTCCAACGTATGAGCTGCAGTCGGCAACGGATGACTTTCCCTCCGCTAGAATGGAAATCCACCGAGTCCCTTTGCTGTGTGCAGGGCTGTGTCAAGACAAACGGCATTGACAAACACTCAAGGGAAAAGACGACGTAATGTTCTCGAGGACAGAATATATTATTGCAGCTGACATGGACCGAGAGAACAGTGGCTTTGCAGAGTAAGAGACTTATGGTAAAAACGCAGACCTCCGATGGGAACCTCAATGCCGGCAGGTTAACAGTGTCCCTGGTGCTTTCACTGTGGATTATGCAGATGGAGGGTTTTTGACGTCTTTTACTCTATTTGACAGGATCGCATATGGATTGACTACAAATGTAACTGTTCAGTTTCCACTAGAGCCCAGATCAccactatatatttatatttatatagtgatggtccaggattttgttttttaacccgCACGTACATTTTTGGGGACTTGTTTGGAGGACAATTGGGACATTTTGGcatgattttaaattgaaactgtaattgcaatatttaacatattatttagataaaaacaacaaatattaatttatttcattaactACTGATTTTTTTACGGGACTATCCTACATTGAGAGTAGATAGTAGGATTTCCTCGTGGAGCATTTTTTGTTGGTATTGTTTATAAATGTAGcaaagatgacaaaaaaaacaatacactggATCTGTATATAATAGGTCTTTATCAGATACAActgatacatttataaatatatgtatgtgtgtgtgtatatatttacacacatacagctctggaaaaaattaagagaccacttaacattgatttctg

Function


symbol description
wnt7a Enables cytokine activity. Involved in several processes, including cartilage development; embryonic limb morphogenesis; and regulation of synapse assembly. Is active in glutamatergic synapse. Implicated in Fuhrmann syndrome and Schinzel type phocomelia. Biomarker of leiomyoma.

NR:

description
PREDICTED: protein Wnt-7a

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0045165 cell fate commitment biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00572 WNT7; wingless-type MMTV integration site family, member 7

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00017228 True 2639 mRNA 0.48 4 51139838 51155195

Neighbor


gene id symbol gene type direction distance location
AMCG00017222 NA coding downstream 183996 50916408 ~ 50955842 (-)
AMCG00017223 iqsec1b,iqsec1,LOC107566873,LOC107727750,LOC101485759 coding downstream 241465 50898113 ~ 50898373 (-)
AMCG00017219 iqsec1b,LOC107551128 coding downstream 386497 50731649 ~ 50753341 (-)
AMCG00017221 NA coding downstream 417617 50712988 ~ 50722221 (-)
AMCG00017218 NA coding downstream 445647 50692600 ~ 50694191 (-)
AMCG00017233 phf2,LOC102794927 coding upstream 143165 51298360 ~ 51327317 (-)
AMCG00017235 fam120a,LOC107685640,LOC107691381,LOC107581418 coding upstream 189164 51344359 ~ 51363221 (-)
AMCG00017236 LOC105024957,LOC106571792 coding upstream 209994 51365189 ~ 51411576 (-)
AMCG00017239 NA coding upstream 308318 51463513 ~ 51476059 (-)
AMCG00017240 NA coding upstream 341024 51496219 ~ 51525354 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 501067 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 517399 50622181 ~ 50622439 (-)
G19130 NA non-coding downstream 517906 50531201 ~ 50621932 (-)
G19259 NA non-coding upstream 10163 51165358 ~ 51165675 (-)
G19316 NA non-coding upstream 140636 51295831 ~ 51296743 (-)
G19330 NA non-coding upstream 282685 51437880 ~ 51438093 (-)
G19516 NA non-coding upstream 1392542 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 1493813 52649008 ~ 52665182 (-)
AMCG00017178 NA other downstream 1645694 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 2645431 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 5978701 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 6482933 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 7480236 43633770 ~ 43659602 (-)
AMCG00017232 NA other upstream 29036 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 275492 51430687 ~ 51435239 (-)
G19335 NA other upstream 290392 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 691401 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 1703145 52858340 ~ 52866435 (-)

Expression



Co-expression Network