AMCG00017232


Basic Information

Item Value
gene id AMCG00017232
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51184231 ~ 51212373 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017232
ATGGGAGGCCGAGCTGCGACAGCCGGCCGCGCCGCGACTGCACCGAGCGGAGGATGGAAATCCGGACGAAACGCAGCGCGGAGTCCGCACAAGCCCGGGGCCGGCGCTCGGACACGGGCGCCCAGTAGCGCGATGATCCTCCCTCTGAGTCGCCATGCAGCGAGAGCACCAGACCCGGGCTGTGGAGGCAGAGGGCAACGGAAAGGCACTTCCATGGCAGCCGGTGTTACTCTGTTGAATGACCTGCCTTACTCGACAACTGCGGCAAACGGTGACGATCCCAATCCAGAAATGTTACCAGCCTTCGAAGCCGGTGTCGGCACAGGCAGAGAGCGAAGGAGGATTGTCGAAATGCAGGGTCCCGGCAGAAGGTCCCTCGCGGTGGATTTTCTGAGCGGTTTCCGGAAGAGTCGCTCGGCCTCGGACGTGATCCTCAGAGGGGTCCAGAGGCGGCGCAGCACGGCCCTGGAGACCCTGTCCTCATCCACTCACCGCGTCATGGTGGCGGTCAGCATTGCCGAGGCTCACACGGACTTCAGAGGAGGGAAACtaAGCACCAGAGTACCAACCGCCAAGTACACCAAAGTGGGGGAGACACTGCGGCATGTCATTCCCAGCCACATGCAGTGCTCGATGACCTGCGGAGGGCGGGCCTGCAAGTACGAGAACCCATCCCGCTGGAGCGACCAGGAGCAAGCCATCAAAGGACTCTACTCCTCATGGATTACAGACAACTTGCTGGCTATGGCAAGGCCTTCAACGGAGatcattgaaaaatataacattattgaGCAGTTTCAAagGTATGGAGTAAAGACCGTAATTAATCTGCAGCGCCCGGGGGAACACGCGAGCTGTGGGAATCCGCTGGAGCAAGCGAGCGGTTTCACCTACCGGCCGGAGACGTTCATGGAGGCTGGAAtttatttttataattttggaTGGAAGGACTATGGTGTGGCATCACTTACCACTATCCTTGACATGGTGAAAGTCATGTCGTTTGCGATCCAGGAAGGGAAAATGGCTATTCACTGCCACGCTGGGCTTGGAAGAACGGGTGTTCTGCTAGcctgttatttagtttttacaaCACGGATGAGTGCTGACCAAGCCATTCTGTTCGTACGGGCAAAAAGACCCAACTCAGTTCAGACCCGAGGACAGTTATTGTGTGTCAGGGAGTTTGCTCAGTTTCTCACTCCCCTAAGGAATGTGTTTGCCTGCGCCGAACCCAAAGCCCACGCCATCACCCTGTCCCAGTACTTGATCCGCCAGCGCCACCTGTTGCACGGCTACGAAGCGCGGCAGCTCAAAAATGTGCCAAAGATTGTCCAACTGGTCTGCAAGCTGCTGCTGGACATTGCTGAGAACCGGCAGGTCATTGAAGAAGAGATTTTAGAGATTCCAGACCTCTCAGCTGAGATTGAGAAGACAGTGTCTCAACAGGCCATCCAGCAGCTGGACAAAGAGTTAATTGGGAAAGGCATTCCTGTGTCCTCGCCGCGTCTACCCAAGCTGCCATCAGCTGCACCCAGCAATTTTGGGCTTTCCAGCGAGCATGAACTGAACCCGCTCTGGGGGCGTCGCCAATCCCTTTCTTACCTTAGAAAGCGCCTTAGCTACAGTGACTCTGACCTGACGACTGTTGGGTTAATAGTCCACCAAGGAGGTCCCCCTCTGACTGTGCCTACCAACGTGCTCTACTCCAGCCCGCTCAGTAAACAATGTCTGTCTCAGAACAACCTAGTACAGTCCTGCGACCCGGCAAAGACGCAGTTCGCTCCCTTTCAGAATGCCCAGAATGGCAGCAGAACACCAGACCCTCTATTCGGTTCGTCCACGAGTGTTTGGGACCAAAAAAAACTCATTAGCACAGTTGAACAAAGACCCGGATCTCCCCTTTTCCAAAGGCGGAAACATCCAACAGAAGTGCTGCGTAGCAGGACCTTCTCACTGGGATCCATGGAGAAGAGCGAGCGGCTGGAGAGAGCTTGGAATCGATCCGAAACCCAGGACAGGGGAAACACGGTGAATGGTCAATATGCTTCTTGCGCTGAGAGAAGAAGCAGCTCCGAGGTGGCTCATGCAGCGTTCGCAGACGAAGACAGATCAGAGGAGATCCCCTGCATCACTCTACAGTCAGAGCTAACGCTGGACTCCAGGAGGCTGCTGGTGGCCCAGGCACTTGCCGTTGACATCGACtgtgaagaagaggaagacCACAAGGAGAGAGTTTTAAATTGGCAGATTGAGCTTAACTCCAGAGAAGGCGCCTGGGAGAGGATCTGCACAGAGCGAGACCCTTTTGTCCTGTCCGGCCTCATGTGGTCCTGGCTGGAGCAGCTGAAGGAACCGATAATAACCAAAGACGACGTACGAACATTAGCAAAGAAAAGCAGTGACCCTCATACTGCCCTTTACTCACTGGACAAGGGGCCTCAGCAGACCCTGGTCTGTATAGTGGACTGTATTGCACGGGTACAGACGATACCAGAGGAAGTGGAAGAAGCTTTTCTTGAACGGTGCATAAAAGCTTTTAGCAAGATTGGATTGGATTCAGATGATGGGCCGATGGTTTATAAAACCCTGAAAACAATCTTAACACCAGTCCTGTCTGAGATGAGAAAGCGAGCTATGGCCGAGGCAGAGGATCCGTGTTACTGTGTACACGTCCCCTGAGCCCTCCGCAGcactgtgtgtgcatgcgtctgtgcgtgagtgtgtgtctgtgtgagcgtgtgtgtgtgcgcgtctgtgtctgtgtgtgcgtgtc
>TU23900
ATGATTGTGGTAGGGTCTGGCTGACAGCAGAGCCTGGACTCCAAACTTGAGCAGCTCTGCCGGGGCAGAGACCTTGTGGTCCGGGTGGTCAGTCAGGATCTCCTCGATCATGAAACTCCTGTACCGATGGGACCTGTGGTCGGGGTGCACCTCCGGTGGATAGTAATGTGCTCCCAAATCCAAAGGATGCTGCATCCTGGAATGAATAGCAACCACAAATCCAGGTAGAGACGAAAGACCAAGTTTTAGTTCGGGGAAACACGCAGGGTCTGAAAGGGTGTCTTCTGAAGCTGGCCGGCGAGTTTCCTTCGAGATGCCATTGAGATGCTGGTGTTTGGGGCTTCGCTCTTCACAGCCAAAGCGTCATTTTCCTCCAGCGCCGATACCTTGTAAGCGGTGACAGTAAAGCATCcTCTTGATGCTCGGCGCAGGCGCGTTTCGCACGTCGGCCACCCCTCCCTCACGTGTTCCGCGCCGGCCAATGGGAG

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K18078 PTPDC1; protein tyrosine phosphatase domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017232 True 2776 mRNA 0.55 11 51184231 51200937
TU23900 False 488 lncRNA 0.56 2 51200931 51212373

Neighbor

gene id symbol gene type direction distance location
AMCG00017228 wnt7a,LOC107749431,LOC107685644,LOC107727836,LOC108424657,LOC107691337 coding downstream 29036 51139838 ~ 51155195 (-)
AMCG00017222 NA coding downstream 228389 50916408 ~ 50955842 (-)
AMCG00017223 iqsec1b,iqsec1,LOC107566873,LOC107727750,LOC101485759 coding downstream 285858 50898113 ~ 50898373 (-)
AMCG00017219 iqsec1b,LOC107551128 coding downstream 430890 50731649 ~ 50753341 (-)
AMCG00017221 NA coding downstream 462010 50712988 ~ 50722221 (-)
AMCG00017233 phf2,LOC102794927 coding upstream 85987 51298360 ~ 51327317 (-)
AMCG00017235 fam120a,LOC107685640,LOC107691381,LOC107581418 coding upstream 131986 51344359 ~ 51363221 (-)
AMCG00017236 LOC105024957,LOC106571792 coding upstream 152816 51365189 ~ 51411576 (-)
AMCG00017239 NA coding upstream 251140 51463513 ~ 51476059 (-)
AMCG00017240 NA coding upstream 283846 51496219 ~ 51525354 (-)
G19259 NA non-coding downstream 18556 51165358 ~ 51165675 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 545460 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 561792 50622181 ~ 50622439 (-)
G19130 NA non-coding downstream 562299 50531201 ~ 50621932 (-)
G19137 NA non-coding downstream 613508 50568350 ~ 50570723 (-)
G19316 NA non-coding upstream 83458 51295831 ~ 51296743 (-)
G19330 NA non-coding upstream 225507 51437880 ~ 51438093 (-)
G19516 NA non-coding upstream 1335364 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 1436635 52649008 ~ 52665182 (-)
G19551 NA non-coding upstream 1467580 52679953 ~ 52691186 (-)
AMCG00017178 NA other downstream 1690087 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 2689824 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 6023094 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 6527326 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 7524629 43633770 ~ 43659602 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 218314 51430687 ~ 51435239 (-)
G19335 NA other upstream 233214 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 634223 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 1645967 52858340 ~ 52866435 (-)
AMCG00017299 NA other upstream 1982460 53194833 ~ 53215336 (-)

Expression


Co-expression Network