AMCG00017234 (LOC100690894,LOC102799047,LOC102206238)


Basic Information

Item Value
gene id AMCG00017234
gene name LOC100690894,LOC102799047,LOC102206238
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51430687 ~ 51435239 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017234
ATGAGAAGATCTCGGAGTGGCCGTGGTCGCCGCAGCGCCAACCCCATCAACTTAAACCATTATGCCAACAAGAAGAGTGCGGCGGAGAGCATGCTCGACGTGGCACTGCTCATGGCAAACGCGTCGCAGCTGAAGGCCGTCATTGAGCAGGGGCCGGACTTCAGCTTCTACATCCCCCTCATCGCCCTAATCAGCATCTCGCTCACGCTGCAGATCGCCGTGGGGGTGCTGCTCATATTCATCGTTCGGGACAATCTgaatgatgaaaacaaacaaatccgaCTAAACCTACTCAACAACATCGCCACGGGGCTGGTCTTCATCATTGTGGTTGTGAACGTCTTCATCACAGCGTTTGGGGTTCAGAGACCCGTCACACCAAGCAGTTCACCATAGACTGGAGCTCACAGGTGCTGGACACCTGGACTCGAGcagCACTAGTACTGAatctgcagagagagcaggggaCCGAAGGCATTAGACACTCACCGTCAGACCTGAACACCACTAGTTCTACCTGCAGAACCTGGACATTgaccttcaacctatttaccaCCAACTCAGAAGCtgactgaattgacttaaattaaggcaaactacagacaagattaacttcagtTAACTAATCCTTCTGTTTCAGCACAGCTTGCTCGTTAAGTATATACACTCTTGTATATAATGGTAAAGAATACATTGCATGGAAAAAGGTCATACAAACCGCAAAACGGTATATTTACCTTAGGCCTCCTGTGGCCTAAAGAATACAGCGCTACACCAAATTAATACCAAATAACCTTTACAagcttgttttcatttgctgtTTAAACACACCTCAACGATTGCAATATAACAGgccttttttaataaaaaaggaacataaATCACAGAGACGGGTCAATTTATGTTCTGTTATATTCTATATTTGCTTTAACGTCTTGCAAGTCTTTAGAGTTAGGGCTCCCCCTAGGGTGGTGTTAGTGCCATACAGTTTATTTCTGCTAAATCAGTGAAGCAGAGTTCAGCAGTTGCCTTTCTTGTTGGTTTTATCTATGCACAACACTTACAAATACATGGTGCAAAACTAATCAATGACTGATGTTTACTACATGATGTAATTGCTTCTACTGAGACATTTTCCTGCATCATTAATTTATATCagcttttataataattatgcaaCCCTCTGCCTTACATGTTACTGatcagtattcattttttaaaaggccAGTAGCCTACTAGTCACAACTCTTATTTTCctacagtttcttttttaaatatagataattttaatttttttatcatgaaaataagaaaaagctgAAACTATGAGTTCGACTTGAAGTTGCAAAGCTATATTCAAGTTGTACAAAatgaacatattaaaaaaaacttttatgaTGCAGTCACTTCATAACAAGGTGGAATCAGAACtatgaaataacaaataaactatGCACTTTGAATTGCTGTCGAACATGTTAGCAATATTATGAGCTTGCTGTCTGTGACAGTGGGCGCAGTTTATCTGTTCTTATGAAGTACAAAAGAATGCACAAAAAGTCCATGTAAGTTAACGTGTTTAGATTGGGTTGCTTCAGTTAGCTTTGACTCTTATTATTGATGTTGTGAAATGTATCGAGTGTACATATCAAGTTGTATTATTCTCTAGTGAATGAGGCGTCTTCCAACTTTCTACACCTTTTACCTGCTTTATAGGGCGAAAGCTTCGTCCCACTCAAAAAGGGTTCCTCTTTGTATGAAAGAATAAATATGCAGGTGTTGGATAAAGGTTTTACATGACCAACGGGCAGCGATGtgatttattaaatcaaattgaaaacCTGCTTTTCCAGGCTCTTAATCTGTAACACCTGGACCTAATTTCCTAGTCTCCCTGTCCGTGATGACACTGAACATCCTGTTGGTGCAACGGGGGTGGACAGCGCTTTCGCTGCTCATCTTTGGATGTCATGAGGTTTCTGTGTACACTGACATTTGAGGCatgttatgtatataaaatgtaatttgtggtTTACTTTTCTGGGGACCAAGTAAGTAAGCTCtgattcagatttttattttgttttatttaaaagtaatctgTCAATAggttttacatgtattttaaaacgtttgctagatttaaataaatgtaagaaataatgtcttgtctgttgttgttgtcaagTCAAGAATAAGCCTATTTggctataattattattactacgccctgatccagggcaacttacagttgaCAGTACTTTAAGCCTA
>TU23976
ATATTCCAGAGATCTCGGAGTGGCCGTGGTCGCCGCAGCGCCAACCCCATCAACTTAAACCATTATGCCAACAAGAAGAGTGCGGCGGAGAGCATGCTCGACGTGGCACTGCTCATGGCAAACGCGTCGCAGCTGAAGGCCGTCATTGAGCAGGGGCCGGACTTCAGCTTCTACATCCCCCTCATCGCCCTAATCAGCATCTCGCTCACGCTGCAGATCGCCGTGGGGGTGCTGCTCATATTCATCGTTCGGGACAATCTgaatgatgaaaacaaacaaatccgaCTAAACCTACTCAACAACATCGCCACGGGGCTGGTCTTCATCATTGTGGTTGTGAACGTCTTCATCACAGCGTTTGGGGTTCAGAGACCCGTCACACCAAGCAGTTCACCATAGACTGGAGCTCACAGGTGCTGGACACCTGGACTCGAGcagCACTAGTACTGAatctgcagagagagcaggggaCCGAAGGCATTAGACACTCACCGTCAGACCTGAACACCACTAGTTCTACCTGCAGAACCTGGACATTgaccttcaacctatttaccaCCAACTCAGAAGCtgactgaattgacttaaattaaggcaaactacagacaagattaacttcagtTAACTAATCCTTCTGTTTCAGCACAGCTTGCTCGTTAAGTATATACACTCTTGTATATAATGGTAAAGAATACATTGCATGGAAAAAGGTCATACAAACCGCAAAACGGTATATTTACCTTAGGCCTCCTGTGGCCTAAAGAATACAGCGCTACACCAAATTAATACCAAATAACCTTTACAagcttgttttcatttgctgtTTAAACACACCTCAACGATTGCAATATAACAGgccttttttaataaaaaaggaacataaATCACAGAGACGGGTCAATTTATGTTCTGTTATATTCTATATTTGCTTTAACGTCTTGCAAGTCTTTAGAGTTAGGGCTCCCCCTAGGGTGGTGTTAGTGCCATACAGTTTATTTCTGCTAAATCAGTGAAGCAGAGTTCAGCAGTTGCCTTTCTTGTTGGTTTTATCTATGCACAACACTTACAAATACATGGTGCAAAACTAATCAATGACTGATGTTTACTACATGATGTAATTGCTTCTACTGAGACATTTTCCTGCATCATTAATTTATATCagcttttataataattatgcaaCCCTCTGCCTTACATGTTACTGatcagtattcattttttaaaaggccAGTAGCCTACTAGTCACAACTCTTATTTTCctacagtttcttttttaaatatagataattttaatttttttatcatgaaaataagaaaaagctgAAACTATGAGTTCGACTTGAAGTTGCAAAGCTATATTCAAGTTGTACAAAatgaacatattaaaaaaaacttttatgaTGCAGTCACTTCATAACAAGGTGGAATCAGAACtatgaaataacaaataaactatGCACTTTGAATTGCTGTCGAACATGTTAGCAATATTATGAGCTTGCTGTCTGTGACAGTGGGCGCAGTTTATCTGTTCTTATGAAGTACAAAAGAATGCACAAAAAGTCCATGTAAGTTAACGTGTTTAGATTGGGTTGCTTCAGTTAGCTTTGACTCTTATTATTGATGTTGTGAAATGTATCGAGTGTACATATCAAGTTGTATTATTCTCTAGTGAATGAGGCGTCTTCCAACTTTCTACACCTTTTACCTGCTTTATAGGGCGAAAGCTTCGTCCCACTCAAAAAGGGTTCCTCTTTGTATGAAAGAATAAATATGCAGGTGTTGGATAAAGGTTTTACATGACCAACGGGCAGCGATGtgatttattaaatcaaattgaaaacCTGCTTTTCCAGGCTCTTAATCTGTAACACCTGGACCTAATTTCCTAGTCTCCCTGTCCGTGATGACACTGAACATCCTGTTGGTGCAACGGGGGTGGACAGCGCTTTCGCTGCTCATCTTTGGATGTCATGAGGTTTCTGTGTACACTGACATTTGAGGCatgttatgtatataaaatgtaatttgtggtTTACTTTTCTGGGGACCAAGTAAGTAAGCTCtgattcagatttttattttgttttatttaaaagtaatctg

Function

NR:

description
PREDICTED: ninjurin-1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017234 True 2271 mRNA 0.39 4 51430687 51435239
TU23976 False 2106 TUCP 0.40 3 51430855 51435068

Neighbor

gene id symbol gene type direction distance location
AMCG00017236 LOC105024957,LOC106571792 coding downstream 19111 51365189 ~ 51411576 (-)
AMCG00017235 fam120a,LOC107685640,LOC107691381,LOC107581418 coding downstream 67466 51344359 ~ 51363221 (-)
AMCG00017233 phf2,LOC102794927 coding downstream 103370 51298360 ~ 51327317 (-)
AMCG00017228 wnt7a,LOC107749431,LOC107685644,LOC107727836,LOC108424657,LOC107691337 coding downstream 275492 51139838 ~ 51155195 (-)
AMCG00017222 NA coding downstream 474845 50916408 ~ 50955842 (-)
AMCG00017239 NA coding upstream 28274 51463513 ~ 51476059 (-)
AMCG00017240 NA coding upstream 60980 51496219 ~ 51525354 (-)
AMCG00017242 NA coding upstream 136117 51571356 ~ 51605585 (-)
AMCG00017244 LOC104966709 coding upstream 188813 51624052 ~ 51627775 (-)
AMCG00017241 tkt,LOC106566687 coding upstream 232309 51667548 ~ 51685160 (-)
G19316 NA non-coding downstream 133944 51295831 ~ 51296743 (-)
G19259 NA non-coding downstream 265012 51165358 ~ 51165675 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 791916 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 808248 50622181 ~ 50622439 (-)
G19137 NA non-coding downstream 859964 50568350 ~ 50570723 (-)
G19330 NA non-coding upstream 2641 51437880 ~ 51438093 (-)
G19516 NA non-coding upstream 1112498 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 1213769 52649008 ~ 52665182 (-)
G19551 NA non-coding upstream 1244714 52679953 ~ 52691186 (-)
G19604 NA non-coding upstream 1333663 52768902 ~ 52769415 (-)
AMCG00017232 NA other downstream 218314 51184231 ~ 51212373 (-)
AMCG00017178 NA other downstream 1936543 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 2936280 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 6269550 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 6773782 44653455 ~ 44656905 (-)
G19335 NA other upstream 10348 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 411357 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 1423101 52858340 ~ 52866435 (-)
AMCG00017299 NA other upstream 1759594 53194833 ~ 53215336 (-)
G19730 NA other upstream 1948101 53383340 ~ 53387709 (-)

Expression


Co-expression Network