AMCG00017240


Basic Information

Item Value
gene id AMCG00017240
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51496219 ~ 51525354 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017240
ATGGAGATCGCTGTTTTGCTCTCCTGGCAACAGCGCTCCAGCAGTGCGTCGAGCACAATCCAGtgtgtatttatattttttccaggtGGTTCTCCAACAGCATTGCAAATCAAGTGTGGCCCCATTGAGCCCAGTTCACCACTGCAAGACAAAGGGCAGCTGCACCTCCATCCTCCTGAGCCATGTCTCCAGAGATCAGGGAAACACCTCATCAACAATGCTGCGGCAGTGAAGAAGCCCCCCGCACAGAAACCTCAAGTGCCTCCTAAGCCCGGTCACCTGCAGCATCTCGGTCCAGAGAGGAAGCCCAAGGTCATCCCACCAGCTCCTTCCCGACCTCTCCCCGCCAACCCGCCGCCAAAGCCAAGCAAGAATTCGGTGCCAacagagaaggaggagaaggatcCAGGAAAAAGTGTGTGTCTGCTCATTGAGAAGTTTGAAAAGTCCAGaacACCTATCCTTGGAATCCATAGAAGAAGTCAATTACACCTCTATCTAAATATGGATACAACCCAGGAGTCGATGGAGCAGCTGGGCAAGGACTCCGAACCACAAGATTCAAGTGACTCTTCCACAGCGGATAAACTAGCACTTAGCGATTCTGAAAGGACACCGGACGTCACGGAGCTGTCGAATTTCAGCACGTTGCGAATTGGTGAGAAAAGCGAAATCAAAAACGCCGGGGACTGCTCCGCCGTCAGCCAGAAAGAGGACCCCGGCGAGCTCAATGACAATCAAGACTCTGCCTTGGAGCAAAACGGGAATGGCAAAATTCCCAACAGGGACAGTGGGATCGACAGCCCTTCGTGCACCGTGGAAGGAGAGGTGTTTCCACACGACGAAGCCATCGACGAGCAGAACGAGAGCATGGCTGAGGCTGACAAGGCGAGCTATGCTTCTTCCATGGACAATAAGAGAGACTCCTCTTCCACAGAGAATAAGAGAGACTCCACTCAGGATGAGGAGGACAGTGATATGGACGAGGGTAGCAGCGAGGAACAGGAAACGGCAGAAGTGacaaaaacagagcagacagaTGCATCTAAGTGCACGGAGCCTCAGAAATTGCTGAACATTGCCAGGGAACTCCTACAGACGGAGGAGGCCTATGTGAAGAGGTTACACCTACTGGACCAGGTATTTTGCACTAAATTAACAGAAGCTGGAATTCAGCAAGATGTCATCACTGGAATCTTCTCGAACATCTCCTCGATCTATTGCTTTCACGAGCAGTTTCTCCTCCCCGAGCTGAAGACCCGCATCATCAATGAGTGGGAGTCAAATCCTCGGATTGGAGACATCCTACAGAAGCTGGCTCCGTTCATGAAGATGTATGGAGAGTACGTGAAGAACTTCGATCGGGCAATGGACCTGGTCAACACATCGACACAGCGATCATCTCAGTTCAAGAGTACTGTTCAAAACATACAAaagcaggaAGTGTGTGGGAACCTAACCTTGCAACATCACATGCTTGAGCCGGTGCAGAGGATCCCACGGTATGAGCTGCTGCTCAAGGACTACCTGAAGAAACTGCCCGAGGACGCCCTGGACAGGAAGGATGCCGAGAAGGCTCTGGAACTCATCTCCACAGCCGCCAACCACTCAAATGCAGCTATTAGAAAAATGgAAAAGATGCACAAGCTGCTCGAAGTGTATGAAAGACTTGGAGGGGAAGAGGATATTGTAAACCCTGCCAATGAGCTGATCAAAGAGGGACATATCAAGAAAATGTCGGCCAAGAACGGGACTGCTCAGGACCGATATTTATACCTGTTCAACAACATGGTGCTATACTGTGTGCCAAAACTACGGCTAATAGGTCAGAAATTCAGCGTGCGAGAGAGGATCGACATCGCAGGCATGGAGgtgcAAGAGAGGGTGAAGCATAATTTGCCTCACACATTTGCAATCAGTGGGAAACAGAGATCGCTGGAGCTACAAGCCAGAACCGAGGAAGAGAAGACAGATTGGATTCAGGTTATTTTGGCCACGATTGAAAAGCATAAACAGAACAGCGAGACTTTCAACAAAGCCTTCAACAGCTCCTTCTCCAGAGATGAGGAGCACCCCCCCGAATCTCCCaatATACTGGGTAACTTGTCTATGGAATCCTTTGATGGCAGTCCCTCACCGGGTGGGCTGGATCCTTCCAAGAGCAAGTCATACAAAgcgaagaaggagaaggagaagcagATGTGCAAGGGATGCAATGAAACCTTCCACCCCATCACGAAACGGCGTCACCACTGCAAAGCGTGCGGAGCGGCAATCTGTGCAAAATGCTCCGAGACAAAGTTATGTGAAAACAAGACCAGTCGTGTGTGCCGGGAGTGCTTCGAAGGACAGGGGAGCACGGGCCCTGATGCCATCGGGGACCTGAGGAAGAAAACCACATTGGAGAAGCAGAATTCCCTAGTGCCAGAAAACACCCTCATCTGCAGCAGTCTGCATTTCCTGGAGAAGGGGAAGACCTGGAACAAAGTTTGGGTAGCCATTACCAAAAACGAACCGTTGGTGTTGTACCTGCAAGTGAGCAATCAGGAAAGTCGCTCGCCACGTGCCATCCCTCTGCCCGGCTATGAGGTCAGCCTGCCCACGGAGAAGCTGGACATGAAACACGCCTTCAGGCTCAGCCAATCGCAGCAGACCATCCTGTTCAGTGCCGAGGACGAGCAGATGCAGCTGAAATGGGTGGAGGTCCTGTTGAAAGCCGCCAAAGGGGAGACGGTGTCAGATGCAGAACTGAGAAACAGCCAATAGCTTTGCCACTACCAAGCTCCCCCGGGACTTCCTGTGgtgtcaaacacacacattacttgAATTCACTTTACcatggcactttttttttttttagaagatgTATCGGATATTTGTATCTACTTGTatctatgtttttattattgttctggTGTCTTcgagaaggaaagaaaagaaaaaatgagaagctggttgtttttttttattgtagcaTATAATATTCTGTTAACATTCCTTAAAGGGTGATccctccacccccacacacacaaagaatacATTGTGCATACATCTGGTGAAGCATTAACTCTCTTTGTGATTTGCTCATTCGTATTAAGTATTGTTTGTATCTCTCTCAGTCGTTTCAGTGGCTGTTTTGTGCCGATTGTACAGTATAGTATTTCATTAGCTGAAGAACGAAGCTGCCATTCAGATATAAGTGACGCGGAGAGGCGTGGAGGCTTGTGGCTGGCCACTGACCGTTCCCTTTTCATCCTGTCTTCTCACTGTATGATGCTACTTGTGAATTATAagatatataattaattgaCCTTTACTACTGCTAATTGGGGTATGTCTActgttttgtgatttaaaaaaaagcccaTAGCAACATAAAGTACTGTATGTGTTAAGGTTATGAAAATTCCTAAGGATactttagagagagagagagacttctaCATGCATgttaattcacatatttatgtACTGTGCTTCTAAATGAACTTGTTTAACTCTCATCGTAAAGACCCTTCTGTCTTGTAAGTGGAtgaatacagtattattatacGGCTAACTGGGACCATGCACATGGAGCAACACGCAAGCATATCATCAATAAAAACCGCCAACGTCTCATGGTTCAC

Function

GO: NA

KEGG:

id description
K05722 FGD3; FYVE, RhoGEF and PH domain containing 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017240 True 3629 mRNA 0.48 19 51496219 51525354

Neighbor

gene id symbol gene type direction distance location
AMCG00017239 NA coding downstream 20160 51463513 ~ 51476059 (-)
AMCG00017236 LOC105024957,LOC106571792 coding downstream 84643 51365189 ~ 51411576 (-)
AMCG00017235 fam120a,LOC107685640,LOC107691381,LOC107581418 coding downstream 132998 51344359 ~ 51363221 (-)
AMCG00017233 phf2,LOC102794927 coding downstream 168902 51298360 ~ 51327317 (-)
AMCG00017228 wnt7a,LOC107749431,LOC107685644,LOC107727836,LOC108424657,LOC107691337 coding downstream 341024 51139838 ~ 51155195 (-)
AMCG00017242 NA coding upstream 46002 51571356 ~ 51605585 (-)
AMCG00017244 LOC104966709 coding upstream 98698 51624052 ~ 51627775 (-)
AMCG00017241 tkt,LOC106566687 coding upstream 142194 51667548 ~ 51685160 (-)
AMCG00017245 dcp1a,LOC102792442 coding upstream 167744 51693098 ~ 51712522 (-)
AMCG00017249 chdh coding upstream 305498 51830852 ~ 51837789 (-)
G19330 NA non-coding downstream 58126 51437880 ~ 51438093 (-)
G19316 NA non-coding downstream 199476 51295831 ~ 51296743 (-)
G19259 NA non-coding downstream 330544 51165358 ~ 51165675 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 857448 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 873780 50622181 ~ 50622439 (-)
G19516 NA non-coding upstream 1022383 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 1123654 52649008 ~ 52665182 (-)
G19551 NA non-coding upstream 1154599 52679953 ~ 52691186 (-)
G19604 NA non-coding upstream 1243548 52768902 ~ 52769415 (-)
G19663 NA non-coding upstream 1484524 53009878 ~ 53010218 (-)
G19335 NA other downstream 46433 51445587 ~ 51449786 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other downstream 60980 51430687 ~ 51435239 (-)
AMCG00017232 NA other downstream 283846 51184231 ~ 51212373 (-)
AMCG00017178 NA other downstream 2002075 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 3001812 48489127 ~ 48494407 (-)
AMCG00017251 actr8 other upstream 321242 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 1332986 52858340 ~ 52866435 (-)
AMCG00017299 NA other upstream 1669479 53194833 ~ 53215336 (-)
G19730 NA other upstream 1857986 53383340 ~ 53387709 (-)
AMCG00017313 NA other upstream 1926764 53452118 ~ 53531131 (-)

Expression


Co-expression Network