AMCG00017241 (tkt,LOC106566687)


Basic Information

Item Value
gene id AMCG00017241
gene name tkt,LOC106566687
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51667548 ~ 51685160 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017241
CTTGGTGTGTGTCTGCCTGGGACATTGCCATGCATTGggcacacactgtacacacacacacaccgcagGCATTGGGTTGTGCCAGTCAGAtctgcacacacgcacacatctcctctctctctctctctctctctctctctctttccccacaTCAGAAGGCTGACGTGCTTTGCAACTGTGCATCACATTCCTCTCCCTCCCATCTGCAATTCTTCCAGTCTGCCCAGTTGCTGCTCCTGACAGCTTCTCTCCATGGAGGATTACCACAAACCCGACCAGCAGACCCTGCAGGCGCTGAAGAACATCGCCAACCGGCTCCGGATCAACTCCATCAAGGCGACCACCGCGGCCGGGAGCGGCCACCCTACATCATGCTGCAGTGTGGCAGAGATTATGTCGGTGCTGTTCTTCCACACAATGAAGTACAGGCCTGAGGACCCAAGGAACCCCCACAATGACCGCTTTGTGCTCTCCAAGGGTCACGCAGCTCCAGTGCTTTACTCTGTGTGGGCGGAGGCGGGATACCTCAAGGAGAGCGAGCTGCTGAACCTAAGGAAGATCGACTCCATTCTGGAAGGACATCCTGTCCCAAAGCAGCAGTTTGTGGATGTCGCTACAGGATCCTTAGGCCAAGGGCTGGGCGCAGCTTGTGGCATGGCCTATACGGGCAAATACTTCGATAAAGCAAGCTACCGTGTGTTCTGCCTGCTGGGGGACGGGGAGCTGTCGGAGGGAGCCGTGTGGGAAGCCATGTCCTTTGCCGCTTACTACCAGCTGGACAATCTGGTGGCTATCCTGGACATTAACCGCCTGGGGCAAAGTGACCCTGCCCCCCTGCAGCACCATGTGGACAAGTACCAAAGACGCTGTGAAGCTTTCGGCTGGCATGCCATCGTGGTGGACGGGCACAGTGTGGAGGAGCTGTGCAAAGTGCTGTGCCAGGCCAAGCATCAGCCCACTGCCATTATTGCGAAAACAATGAAAGGGAAAGGAATTTCAGGAGTGGAGGACAAGATGGGCTGGCATGGGAAGCCGCTGACCAAAGACATGGCCGACACTGTGCTGAAGGAGCTGCACAGCCGCAtcctcaacaacaacaagcgGCTGTACCCGGCACTGCCCATCGACGATGCCCCGCCCGTCACCATCCGCAACATCCGGATGCCCAATCCTCCCAACTACAAGCCTGGGGAGAAGATTGCTACCAGGAAGGCGTACGGTGTGGCTCTGGCAAAGCTGGGCCGCTGTAGCGACCGTGTGATTGCTTTAGATGGTGACACCAAGAACTCCACCTTCTCTGAAATATTCAGGAATGAGCATCCCAACCGCTTCATCGAATGctacattgctgaacaaaacatgGTGAGTGTTGCCATCGGCTGTGCGACCCGGGACAGGACCGTGGCCTTTGCCAGCACTTTCGCCACCTTCTTCACTCGAGCCTACGACCAGATCCGCATGGCAGCTATCTCCGAGAGCAACATCAACCTGGTGGGCTCCCACTGTGGGGTCTCTATCGGTGAGGACGGGCCCTCGCAAATGGGCTTGGAAGACCTGGCCATGTTCAGGGCCATCCCCACAGCGACCATCTTTTACCCGAGTGACGGCGTCTCCACCGAGAAGGCGGTTGTGTATCAGAGCAAGGATGACCATGTGACCGTGATCGGCGCCGGAGTCACCCTGCACGAGGCTCTCGCGGCAGCCGAGCAGCTCAAGAAAGAGCGAATCAACATCCGGGTGATCGATCCCTTCACTATTAAACCTCTGGATGCAAAAACGATCATCGACAACGCCAAAGCGACCAGGGGCCGGATCATCACTGTGGAAGACCACTACTACGAAGGTGGTCTGGGGGAGGCTGTGACATCGGCGGTGGTGGGTGAGCCCGGGTTCATGGTGCACCGTCTGGCCGTGTCCCACGTCCCACGCAGCGGCAAGCCTGCGGAGCTGCTCAAGATCTTCGGCATCGACAAAGACGCCATCATGCAGGCGGTCAAGAAAATGATCAGCAACTCGGCCAATGCAAAGTAATCACACCAGAGCACGCCGATACTGTATCTCACTGACATTGACAGAAATCACTTCACAGCAGCTTCACAGGCCAACCGCTTCGATTAATAAACTGGTCGCTGAAATCCTGCAAGAATTGTACTTCTGTTCATTGTCATTTACCCCAGTTACAACACTCCCTTAAGTATCAGTAAAATGTTTGTCCCATGAGAATGCATAACGTGTTAGTATgaaacaggttaaaaaaaagtatgtgtcactctttttttttaaatattttaaataaatacacccttTCTGTACCCTTATACGGATGACCACATTAAATATTGCCACCGATTTACTGCAAACTTTAAGGTCATGTTCAGTATTGATTTAaagtattgcttttctttttacccTTAAAATGTTATCAccaaataaaagtaatgatttcttcacaaaaaaa

Function

symbol description
tkt Enables metal ion binding activity; protein homodimerization activity; and transketolase activity. Involved in glyceraldehyde-3-phosphate biosynthetic process and pentose-phosphate shunt. Located in nuclear body.

NR:

description
PREDICTED: transketolase

GO: NA

KEGG:

id description
K00615 E2.2.1.1, tktA, tktB; transketolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017241 True 2458 mRNA 0.53 13 51667548 51685160

Neighbor

gene id symbol gene type direction distance location
AMCG00017244 LOC104966709 coding downstream 39773 51624052 ~ 51627775 (-)
AMCG00017242 NA coding downstream 61963 51571356 ~ 51605585 (-)
AMCG00017240 NA coding downstream 142194 51496219 ~ 51525354 (-)
AMCG00017239 NA coding downstream 191489 51463513 ~ 51476059 (-)
AMCG00017236 LOC105024957,LOC106571792 coding downstream 255972 51365189 ~ 51411576 (-)
AMCG00017245 dcp1a,LOC102792442 coding upstream 7938 51693098 ~ 51712522 (-)
AMCG00017249 chdh coding upstream 145692 51830852 ~ 51837789 (-)
AMCG00017250 NA coding upstream 178174 51863334 ~ 51865422 (-)
AMCG00017254 NA coding upstream 339123 52024283 ~ 52029687 (-)
AMCG00017255 LOC103367232 coding upstream 407267 52092427 ~ 52104090 (-)
G19330 NA non-coding downstream 229455 51437880 ~ 51438093 (-)
G19316 NA non-coding downstream 370805 51295831 ~ 51296743 (-)
G19259 NA non-coding downstream 501873 51165358 ~ 51165675 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 1028777 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 1045109 50622181 ~ 50622439 (-)
G19516 NA non-coding upstream 862577 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 963848 52649008 ~ 52665182 (-)
G19551 NA non-coding upstream 994793 52679953 ~ 52691186 (-)
G19604 NA non-coding upstream 1083742 52768902 ~ 52769415 (-)
G19663 NA non-coding upstream 1324718 53009878 ~ 53010218 (-)
G19335 NA other downstream 217762 51445587 ~ 51449786 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other downstream 232309 51430687 ~ 51435239 (-)
AMCG00017232 NA other downstream 455175 51184231 ~ 51212373 (-)
AMCG00017178 NA other downstream 2173404 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 3173141 48489127 ~ 48494407 (-)
AMCG00017251 actr8 other upstream 161436 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 1173180 52858340 ~ 52866435 (-)
AMCG00017299 NA other upstream 1509673 53194833 ~ 53215336 (-)
G19730 NA other upstream 1698180 53383340 ~ 53387709 (-)
AMCG00017313 NA other upstream 1766958 53452118 ~ 53531131 (-)

Expression


Co-expression Network