AMCG00017242


Basic Information

Item Value
gene id AMCG00017242
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51571356 ~ 51605585 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017242
ATGAGCTTATATGAGAACAAAATGTTGCACGTCCCTAACAAGAGCCGAACTGCACTCGCTCGCAGGCTGCTTGGTGCCTTTGGACAAGCTTATTCCAACCATAAGAAAGTGGCGGCAGACGGGGAGAGTCGGGAGGAGTCTCTGATCCAGGAGTCGGCCTCCAAGGAAGCCTACTACGAGCAGAGGGTCCTGGAGCTGCAGACGGAGCTGAAACAGATGAAAAATGTGCTTGCCAATGCCCAGTCGGAAAACGACCGGCTGTCGTCCATTGCACAGGAGATGCGAGAGCTAATTGCGACTTTGACGGGGCACATTTGGCAGCAGCGTTCCAAACTCAACTGCAGTGGAGTGGCGCTGCAGGAGATGGAGGGGAATAACCAGGTGGGGGAGCTGCAGCGGAGCCGCCTTCGCGATGACATCAAGGAGTACAAGTTCAGGGAGGCCCGGCTGCTGCAGGACTACAccgagctggaggaggagaacaTCTCCCTGCAGAAACAAGTGTCCGTCCTGAAGCAGAGCCAGGTGGAATTTGAAGGCCTGAAGCACGAGATCCGGCGCCTGGAGGAGGACACAGAGTTCCTGAACAGCCAGCTGGAGGATGCCATTCGGCTGAAGGAGATCGCCGAGCGCCAGCTGGCCGAGGCGCTGGAGACCATCAAGACGGAGCGCGAGCAGAAGAACAACCTGCGCAAGGAGCTGTCCCACTACATGAACATCAGCGACTCCATGTACAACAGCCCCCTCAGCATCTCCCTGGACGGCCTGAAGTTCAGTGACGACACCACGGAGCCCAACAATGACGACGTGCTCAACGGCTACGACCACAGCTCCTTCAGCAAGATCGGCCATGGCGAGAACAACCGGGTGTCCACGCCCAAGAAGAACGAGCTGTTCCAGCCGGCGCCCAGCCTGGTCAACGACCTGCTCAGCGAACTCAACATCTCCGAGATCCAGAAGCTCAAACAGCAGCTCATGCAGGTGGAAAGGGAGAAGGTGAATCTTCTGTCCACCCTCCAGGACTCGCAGAAGCAGCTGGAGCATGCCAGGGGAGCGCTGTCAGAGCAGCACGAGAAAGTGAGCCGGCTCACGGAGAACCTCAACGCCATGAAGAAGCTGCAGGCCAGCAAGGAGCGCCAGTCGGCCCTGGACAACGAGAAGGAGCGAGACAGCCACGAGGATGGAGACTATTACGAAGTGGACATCAACGGGCCAGAGATCCTGGAGTGCAAGTACAAGGTGGCCATGGGCGAGATCGGGGATCTCAAGGAGGAACTCAAAACCCTGAAGGCCAAGTATGAGGACTGCGAGTCCAAGTACGTGGAGGAGAAGGGCCGGCTGGAGACAGATGTGGCGATGCTGACGGAGAAGCTGACCTCCCTGGAGAAGACCAACCGGACAGACCGCGACCAGGTGGTGCGTCTGGAGAAGGAGCTGAAGAAGGTGAGCGACGTGGCGGGGGAGACGCAGGGCAGCCTCAGCGTCGCGCAGGACGAGCTGGTGACCTTCAGCGAGGAGCTGGCCAACCTCTACAACCACGTCTGCATGTGCAACAACGAGACGCCCAACAGGGTCATGCTGGACTACTACAAGGAGGGCAAGGGCGGCCGCTCCAGTCCTGAGGGAAGGGGCCGGCGTTCGCCCATCCTGCTCACCAAAGGTCTGTTCCCTGAGCCGGGGAGGGGGGAGAACGGTGATGGCATCCCCTCGCCCGTGTCTTCCCTGCCTTCCCCAGTCTCCGATCACCGTAAGGAGCCCATGAACATCTACAACCTGGTGGCCATCATCAGGGACCAGATCAAACACCTGCAGACGGCCGTGGATCGCACCACCGAGCTCTCCAGACAGAGAGTGGCCACACTGGAACTGGGACAGGTGGTGGACAAAGACAAGGAGGCCTGTATGGAGGAGATCCTGAAGTTGAAGTCCCTGCTGAGCACCAAGCGGGAACAGATCGCCACACTGAGGACCGTGCTGAAGGCCAACAAGCAGACCGCAGAGGTGGCCCTTGCCAACCTGAAGAGTAAGTACGAGAACGAGAAGGCCATGGTGACCGAAACCATGATGAAGCTGCGCAATGAGCTGAAGGCACTCAAAGAGGATGCCGCCACCTTCTCATCTCTCCGGGCCATGTTTGCCACAAGGACAGATAATGTGTCGTCTCCGGTGGCAATGATGCTGGGTACTGAGTACTGGGGCAGATACGCTCTGTCTAGACCACAATCTGCCCCGGTTCACTGGGCGTCTGCTTGGATGAGTATGACGAACTCCGAGCTCAAacgagtggagagagagaagggcggggctgtgctgtgctgtgccatCTTCCTTGGCCAAGAACGAGACTTAGATGGGTGTGACGAGTACGTGACCCAGCTGGACGAGATGCAGAGACAGCTGGCCGCGGCCGAGGATGAGAAGAAGACACTCAACTCCCTGCTGCGCATGGCCATCCAGCAGAAACTGGCCCTTACCCAGCGTTTGGAGGACCTGGAGTTTGACCATGAGCAGACCAGGAGGGGCGGCCGTGGAAAGGCCTCCTCCAGGGGCAAGACCGCCCCGGCCAACCCCCATGTAAGTCTCGGGCACTCCTGCGCCGTGCGCCCCGAGAGCTCCGTCCTCAGTAACCCCGTCTTTTGCAGTGAGAAGTATAAAATCTACTGCGACTAG

Function

GO: NA

KEGG:

id description
K18739 BICD; protein bicaudal D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017242 True 2670 mRNA 0.59 10 51571356 51605585

Neighbor

gene id symbol gene type direction distance location
AMCG00017240 NA coding downstream 46002 51496219 ~ 51525354 (-)
AMCG00017239 NA coding downstream 95297 51463513 ~ 51476059 (-)
AMCG00017236 LOC105024957,LOC106571792 coding downstream 159780 51365189 ~ 51411576 (-)
AMCG00017235 fam120a,LOC107685640,LOC107691381,LOC107581418 coding downstream 208135 51344359 ~ 51363221 (-)
AMCG00017233 phf2,LOC102794927 coding downstream 244039 51298360 ~ 51327317 (-)
AMCG00017244 LOC104966709 coding upstream 18467 51624052 ~ 51627775 (-)
AMCG00017241 tkt,LOC106566687 coding upstream 61963 51667548 ~ 51685160 (-)
AMCG00017245 dcp1a,LOC102792442 coding upstream 87513 51693098 ~ 51712522 (-)
AMCG00017249 chdh coding upstream 225267 51830852 ~ 51837789 (-)
AMCG00017250 NA coding upstream 257749 51863334 ~ 51865422 (-)
G19330 NA non-coding downstream 133263 51437880 ~ 51438093 (-)
G19316 NA non-coding downstream 274613 51295831 ~ 51296743 (-)
G19259 NA non-coding downstream 405681 51165358 ~ 51165675 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 932585 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 948917 50622181 ~ 50622439 (-)
G19516 NA non-coding upstream 942152 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 1043423 52649008 ~ 52665182 (-)
G19551 NA non-coding upstream 1074368 52679953 ~ 52691186 (-)
G19604 NA non-coding upstream 1163317 52768902 ~ 52769415 (-)
G19663 NA non-coding upstream 1404293 53009878 ~ 53010218 (-)
G19335 NA other downstream 121570 51445587 ~ 51449786 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other downstream 136117 51430687 ~ 51435239 (-)
AMCG00017232 NA other downstream 358983 51184231 ~ 51212373 (-)
AMCG00017178 NA other downstream 2077212 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 3076949 48489127 ~ 48494407 (-)
AMCG00017251 actr8 other upstream 241011 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 1252755 52858340 ~ 52866435 (-)
AMCG00017299 NA other upstream 1589248 53194833 ~ 53215336 (-)
G19730 NA other upstream 1777755 53383340 ~ 53387709 (-)
AMCG00017313 NA other upstream 1846533 53452118 ~ 53531131 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036073 BICD2 coding NC_007119.7 CM002892.2 53344726 ~ 53378098 (+)
grasscarp (Ctenopharyngodon idella) CI01000050_00235034_00262436 NA coding CI01000050 null 235034 ~ 263619 (+)