AMCG00017244 (LOC104966709)


Basic Information

Item Value
gene id AMCG00017244
gene name LOC104966709
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51624052 ~ 51627775 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017244
ATGTCCGTGGAGGAGCAGAAGGGCTTCCCCGGGATGGCGGAGTCGCTGCGGGGGGAGGTGGAGCGGCTGTCCCGGGAGCTGAGCGAGACGAGCCGGGAGAAGATCCAGGCGGCGGAGTACGGGCTGGCGGTGCTGGAGGAGAAGCAGCAGCTCAAGCAGCAGTACGACGAGCTGGAGGCCGAGTACGAGGTCGTGCGGCAGGAGCTGGACCAGCTGAAGGAGATGTTTGAAGTCTGTCCCCTGTCCCCCACGTGTGGCAGCACAGCTCACATCAGTCTTAACTCTTAA

Function

NR:

description
PREDICTED: protein bicaudal D homolog 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017244 True 288 mRNA 0.64 2 51624052 51627775

Neighbor

gene id symbol gene type direction distance location
AMCG00017242 NA coding downstream 18467 51571356 ~ 51605585 (-)
AMCG00017240 NA coding downstream 98698 51496219 ~ 51525354 (-)
AMCG00017239 NA coding downstream 147993 51463513 ~ 51476059 (-)
AMCG00017236 LOC105024957,LOC106571792 coding downstream 212476 51365189 ~ 51411576 (-)
AMCG00017235 fam120a,LOC107685640,LOC107691381,LOC107581418 coding downstream 260831 51344359 ~ 51363221 (-)
AMCG00017241 tkt,LOC106566687 coding upstream 39773 51667548 ~ 51685160 (-)
AMCG00017245 dcp1a,LOC102792442 coding upstream 65323 51693098 ~ 51712522 (-)
AMCG00017249 chdh coding upstream 203077 51830852 ~ 51837789 (-)
AMCG00017250 NA coding upstream 235559 51863334 ~ 51865422 (-)
AMCG00017254 NA coding upstream 396508 52024283 ~ 52029687 (-)
G19330 NA non-coding downstream 185959 51437880 ~ 51438093 (-)
G19316 NA non-coding downstream 327309 51295831 ~ 51296743 (-)
G19259 NA non-coding downstream 458377 51165358 ~ 51165675 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 985281 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 1001613 50622181 ~ 50622439 (-)
G19516 NA non-coding upstream 919962 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 1021233 52649008 ~ 52665182 (-)
G19551 NA non-coding upstream 1052178 52679953 ~ 52691186 (-)
G19604 NA non-coding upstream 1141127 52768902 ~ 52769415 (-)
G19663 NA non-coding upstream 1382103 53009878 ~ 53010218 (-)
G19335 NA other downstream 174266 51445587 ~ 51449786 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other downstream 188813 51430687 ~ 51435239 (-)
AMCG00017232 NA other downstream 411679 51184231 ~ 51212373 (-)
AMCG00017178 NA other downstream 2129908 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 3129645 48489127 ~ 48494407 (-)
AMCG00017251 actr8 other upstream 218821 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 1230565 52858340 ~ 52866435 (-)
AMCG00017299 NA other upstream 1567058 53194833 ~ 53215336 (-)
G19730 NA other upstream 1755565 53383340 ~ 53387709 (-)
AMCG00017313 NA other upstream 1824343 53452118 ~ 53531131 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003621 bicd2 coding NC_007122.7 CM002895.2 37049105 ~ 37088934 (+)
grasscarp (Ctenopharyngodon idella) G213174 NA unknown CI01000050 null 235551 ~ 253062 (-)
mexican tetra (Astyanax mexicanus) G178482 sh2d4a non-coding NC_035916.1 CM008319.1 22950963 ~ 22957159 (+)