Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017252 |
| gene name | cacna2d3,LOC103362818 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 51948217 ~ 51985368 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| cacna2d3 | Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACNA2D3 (calcium voltage-gated channel auxiliary subunit alpha2delta 3). |
| description |
|---|
| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017252 | True | 1146 | mRNA | 0.47 | 11 | 51948217 | 51985368 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017247 | NA | coding | upstream | 103363 | 51838583 ~ 51844854 (+) |
| AMCG00017248 | LOC107743249,LOC106566685 | coding | upstream | 120442 | 51757725 ~ 51827775 (+) |
| AMCG00017246 | LOC106571974 | coding | upstream | 222689 | 51723699 ~ 51725528 (+) |
| AMCG00017237 | NA | coding | upstream | 284376 | 51653530 ~ 51663841 (+) |
| AMCG00017238 | NA | coding | upstream | 298699 | 51647404 ~ 51649518 (+) |
| AMCG00017253 | cacna2d3,LOC103362818 | coding | downstream | 19852 | 52005220 ~ 52015155 (+) |
| AMCG00017267 | NA | coding | downstream | 398652 | 52384020 ~ 52413911 (+) |
| AMCG00017275 | NA | coding | downstream | 755795 | 52741163 ~ 52743891 (+) |
| AMCG00017279 | NA | coding | downstream | 772095 | 52757463 ~ 52760504 (+) |
| AMCG00017288 | NA | coding | downstream | 932684 | 52918052 ~ 52922397 (+) |
| G19366 | NA | non-coding | upstream | 376223 | 51565289 ~ 51571994 (+) |
| G19292 | NA | non-coding | upstream | 608100 | 51339913 ~ 51340117 (+) |
| G19275 | NA | non-coding | upstream | 651499 | 51295832 ~ 51296718 (+) |
| G19245 | NA | non-coding | upstream | 809382 | 51137293 ~ 51138835 (+) |
| G19195 | NA | non-coding | upstream | 1220066 | 50727740 ~ 50728151 (+) |
| G19465 | NA | non-coding | downstream | 121580 | 52106948 ~ 52116341 (+) |
| G19515 | NA | non-coding | downstream | 562381 | 52547749 ~ 52548031 (+) |
| G19588 | NA | non-coding | downstream | 811564 | 52796932 ~ 52802211 (+) |
| G19591 | NA | non-coding | downstream | 865563 | 52850931 ~ 52854722 (+) |
| G19617 | NA | non-coding | downstream | 872785 | 52858153 ~ 52863723 (+) |
| G19114 | raf1,LOC108276324 | other | upstream | 1384939 | 50559450 ~ 50563278 (+) |
| G19113 | NA | other | upstream | 1395232 | 50551880 ~ 50552985 (+) |
| AMCG00017183 | NA | other | upstream | 2220650 | 49713467 ~ 49727567 (+) |
| AMCG00017173 | NA | other | upstream | 2544372 | 49402531 ~ 49403845 (+) |
| AMCG00017167 | NA | other | upstream | 2565999 | 49372022 ~ 49382218 (+) |
| AMCG00017280 | NA | other | downstream | 828885 | 52814253 ~ 52817369 (+) |
| AMCG00017287 | NA | other | downstream | 835693 | 52821061 ~ 52834042 (+) |
| G19683 | NA | other | downstream | 1350541 | 53335909 ~ 53339655 (+) |
| G19754 | NA | other | downstream | 1518064 | 53503432 ~ 53536464 (+) |
| G19829 | NA | other | downstream | 1805179 | 53790547 ~ 53792694 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_004272 | cacna2d3 | coding | NC_007122.7 | CM002895.2 | 36688794 ~ 36765834 (-) |
