AMCG00017253 (cacna2d3,LOC103362818)


Basic Information

Item Value
gene id AMCG00017253
gene name cacna2d3,LOC103362818
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52005220 ~ 52015155 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017253
ATGGTCAACAGGAAGACGGGGAAATTCTCCATGGAAGTCAAGAAGACCGTTGACAAGGGGAAACGAGTCCTGGTGATGACAAATGATTACTACTATACAGACATCAAGGGCACTCCATTCAGTCTAGGAGTGGCGCTATCCAGGGGGCATGGGAAGTACTTATTCAGGGGAAACGTGTCCATCGAAGAAGGACTACATGACCTGGAACACCCAGATGTTGCCTTGGCAGACGAATGGACGTACTGCAACACGGACCTTCTCCCTGAGCATCGCTACCTGTCCCAGATGGAGGCCATCAAACTGTACCTCAGTGGACGGGACCCTTTGCTGCAGTGTGACAAGGAGCTGATCCAGGAGGTGCTGTTCGATGCTGTGGTGACAGCGCCTTTGGAAGCGTACTGGACCAGCCTGGCACTGAACAAATCAGAaaatTCAGACAAAGGCGTGGAGATCGCTTACCTGGGGACACGGACCGGTCTGTCGAGGATAAACCTCTTTGTCGTCCCGGAACAGCTTTCCAATCAAGACTTCCTGACAGCCGAAGACAAGGAAGGCGTGTTCAATGCCGATCACTTCCCTCTGTGGTACAAGAGGGCGGCGGAGCAGATCTCGGGCACCTTTGTCTACTCTCTCCCATTCACTGCAGGTAAACCACCGGCTCTGGCATTAAATCAGTGTTTCCTATCTGTCTCTGTGCAGCGTCTGTTGTCACTCGTGTTTTTAAAATCAGGTTTTGCTGGCCACGCGTGCGGGTCTTAG

Function

symbol description
cacna2d3 Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACNA2D3 (calcium voltage-gated channel auxiliary subunit alpha2delta 3).

NR:

description
PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017253 True 759 mRNA 0.52 8 52005220 52015155

Neighbor

gene id symbol gene type direction distance location
AMCG00017252 cacna2d3,LOC103362818 coding upstream 19852 51948217 ~ 51985368 (+)
AMCG00017247 NA coding upstream 160366 51838583 ~ 51844854 (+)
AMCG00017248 LOC107743249,LOC106566685 coding upstream 177445 51757725 ~ 51827775 (+)
AMCG00017246 LOC106571974 coding upstream 279692 51723699 ~ 51725528 (+)
AMCG00017237 NA coding upstream 341379 51653530 ~ 51663841 (+)
AMCG00017267 NA coding downstream 368865 52384020 ~ 52413911 (+)
AMCG00017275 NA coding downstream 726008 52741163 ~ 52743891 (+)
AMCG00017279 NA coding downstream 742308 52757463 ~ 52760504 (+)
AMCG00017288 NA coding downstream 902897 52918052 ~ 52922397 (+)
AMCG00017290 NA coding downstream 915335 52930490 ~ 52933688 (+)
G19366 NA non-coding upstream 433226 51565289 ~ 51571994 (+)
G19292 NA non-coding upstream 665103 51339913 ~ 51340117 (+)
G19275 NA non-coding upstream 708502 51295832 ~ 51296718 (+)
G19245 NA non-coding upstream 866385 51137293 ~ 51138835 (+)
G19195 NA non-coding upstream 1277069 50727740 ~ 50728151 (+)
G19465 NA non-coding downstream 91793 52106948 ~ 52116341 (+)
G19515 NA non-coding downstream 532594 52547749 ~ 52548031 (+)
G19588 NA non-coding downstream 781777 52796932 ~ 52802211 (+)
G19591 NA non-coding downstream 835776 52850931 ~ 52854722 (+)
G19617 NA non-coding downstream 842998 52858153 ~ 52863723 (+)
G19114 raf1,LOC108276324 other upstream 1441942 50559450 ~ 50563278 (+)
G19113 NA other upstream 1452235 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 2277653 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 2601375 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 2623002 49372022 ~ 49382218 (+)
AMCG00017280 NA other downstream 799098 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 805906 52821061 ~ 52834042 (+)
G19683 NA other downstream 1320754 53335909 ~ 53339655 (+)
G19754 NA other downstream 1488277 53503432 ~ 53536464 (+)
G19829 NA other downstream 1775392 53790547 ~ 53792694 (+)

Expression


Co-expression Network