AMCG00017254


Basic Information

Item Value
gene id AMCG00017254
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52024283 ~ 52029687 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017254
ATGACAGgGGACATTGTCTTCACACTCGTAGGCATGCTGTTGATCCACCGAGTCGCCGGATGCCCCAAGGAGTGCGTGTGCAACACCAAGACCAAAGTAGTGGACTGCCGGGGGCGGGGACTGTACGACATCCCCCGCAAGATGCAGTTCGACACCCAGGAACTGTACCTGCAGAACAATCGCATCAGGGGCCTGGGCTCCATGGCGTTCAGGGAGACACCCCTGTTGAAGGTGCTAGACCTGGCCAACAACTCCATCACCAGCCTGTCTGCCAACACCTTCCAGGGGCTGCGTGGCCTGCAAGTGCTCAACCTTGCCAACAACTCCATCAGGGAGATCGACAAGCGGCTGTTCAACCCCATAAAAACCCTCTCGGTCCTGAATCTGTCATTCAACCACATCGCCAATCTGCCCGGGACCCTGGCCGACAGCATCAACAACCTCACCAGACTGTCGGTGCGTCACAACCGGCTGCAGAGGCTAGACCGGCTGCTCTTGGACTCCCTCACCAAACTGCAGGCcttgttttttcacaataaCCCTTGGAAGTGTGACTGTCAAGCTATCGGGCTCAAGCTGTGGCTGGAGACCTTCCTTTTCAAAGGCGGAACCATCGACGAGCTCAAGTGTACCCATCCAGAGACCCTCAGAGAGAAAGACCTGAGGAAGATCCCATACGAGATGTTCCAGACGTGCCCCTGGACCAACTACAACTACCTGTTTGCCAACATCCACCACATAGACTCCGAGCACAAGCTGTCCCGTTCTCACTCTCATGGTGAGCCGGGCGGCGAGGGGCTGCCAGAGTGTGAACCCAAGCAGCGACCGCGGCCCGTCAACCTGCGCCACACCATCGCCACCGTGGTCATCACCGGGGTCGTGTGCGGGATCGTCTGCCTCATGATGCTGGCGGCCGCCGTGTATGGGTGTGTGTACGCCACCATCATGGCCAAATATCAGCGGGAACTGAAGAAAGCCGAGCACAAGGCACCCTCCGTGGAGCAGGGCAGCCCGGAGGAGAAGGAACCACTGGATGGATCTCTAGCGTGA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04727 GABAergic synapse
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017254 True 1050 mRNA 0.58 3 52024283 52029687

Neighbor

gene id symbol gene type direction distance location
AMCG00017250 NA coding downstream 158861 51863334 ~ 51865422 (-)
AMCG00017249 chdh coding downstream 186494 51830852 ~ 51837789 (-)
AMCG00017245 dcp1a,LOC102792442 coding downstream 311761 51693098 ~ 51712522 (-)
AMCG00017241 tkt,LOC106566687 coding downstream 339123 51667548 ~ 51685160 (-)
AMCG00017244 LOC104966709 coding downstream 396508 51624052 ~ 51627775 (-)
AMCG00017255 LOC103367232 coding upstream 62740 52092427 ~ 52104090 (-)
AMCG00017256 NA coding upstream 98444 52128131 ~ 52140149 (-)
AMCG00017257 NA coding upstream 144175 52173862 ~ 52177582 (-)
AMCG00017260 NA coding upstream 183130 52212817 ~ 52218105 (-)
AMCG00017259 NA coding upstream 217317 52247004 ~ 52257002 (-)
G19330 NA non-coding downstream 586190 51437880 ~ 51438093 (-)
G19316 NA non-coding downstream 727540 51295831 ~ 51296743 (-)
G19259 NA non-coding downstream 858608 51165358 ~ 51165675 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 1385512 50637315 ~ 50638771 (-)
G19141 NA non-coding downstream 1401844 50622181 ~ 50622439 (-)
G19516 NA non-coding upstream 518050 52547737 ~ 52548050 (-)
G19548 NA non-coding upstream 619321 52649008 ~ 52665182 (-)
G19551 NA non-coding upstream 650266 52679953 ~ 52691186 (-)
G19604 NA non-coding upstream 739215 52768902 ~ 52769415 (-)
G19663 NA non-coding upstream 980191 53009878 ~ 53010218 (-)
AMCG00017251 actr8 other downstream 164016 51846596 ~ 51860267 (-)
G19335 NA other downstream 574497 51445587 ~ 51449786 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other downstream 589044 51430687 ~ 51435239 (-)
AMCG00017232 NA other downstream 811910 51184231 ~ 51212373 (-)
AMCG00017178 NA other downstream 2530139 49487197 ~ 49494144 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 828653 52858340 ~ 52866435 (-)
AMCG00017299 NA other upstream 1165146 53194833 ~ 53215336 (-)
G19730 NA other upstream 1353653 53383340 ~ 53387709 (-)
AMCG00017313 NA other upstream 1422431 53452118 ~ 53531131 (-)
G19808 NA other upstream 1646396 53676083 ~ 53728883 (-)

Expression


Co-expression Network