AMCG00017279


Basic Information

Item Value
gene id AMCG00017279
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52757463 ~ 52760504 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017279
ATGTACCCTTCCTACCTGCCCTGCAGCAGCCTGCAGCACAAGGAGGTGGACTGCACGGCCCACGACCTGACCAGTGTGCCCCAGTTCAGCTCCCCCACCGAGCAGGTACAGACTCTGCTGCTGTCCGAGAACCGCATCGCCCGCGTCTCCGGCAGctccttcctctccttcccCCACCTGCGGAGCCTCAACCTGAGCTGGAACTGCCCGCCGCCGCCCCGCAGCGCCCAGGCCCCCTGCCGGCTGGAGATCGACAAGGGGGCGCTGATCTCTCTGCAGGAGCTCCGCTACCTCGACCTGCGGGGCAATGGGCTGGCAGGCATCCCCGAACTCCCCGGGTCGCTGCAGCACCTGTACCTCAGCAGCAACAGCCTCCTGTTCTCTGAGCCCCCGCCCGGCCCTCCCCTGGCCCAGCTGCAGCGCCTGCACATGGACAATAACTGCTACTACAAGAACCCGTGTGGCCGGAGCCAGGCGACGCACCCCCTCTTCTTCACCGGCATGCAGCAGCTGAGGTTCCTGTCCCTGGGGAACAACAACCTGACCGCGGTACCCAAACATCTGCCACCCACCATGAGGAAGCTCGCTCTCCCATACAACCACATCGAGGCCATCTCCCCAGGGGACTTCGCCCAGCTGCCCAACCTCACCAAGCTGGACCTGAGCAGCAACTGCCGAAGGTGCGAACACGCCTCCGACCCCTGTGTCACGTGTTCCAGGACATCGCTGCTCCTGGCCCAAAACTGCTTCTCCAATCTGTGCTCTTTGCAGTGGCTGGACCTCTCCGATAACTCCCTCACCGCCCTGAACGAGTCTGTCTTTGCTCCTCTAAAAAGCCTGGAGGTCCTGTACCTGAGGGACAACTCCTTGAACAAGGCGTCCCACAACAAGACCAACCTGACCCTGGGGAGCCCGGCCTTTCGCTTCTTCCCCCAGCTCAAGAAGCTTGACCTTTCCTACAACTACAGGAATTTAACCATATTCCAGAGGCTGGCTCTCACCGAAGACTTCAGGCACTTGAGACAGCTGGTCAGCCTGATCATCTCCGGCTGCTTCTTTCGAACCGTGGACGCTGCCTCCATCAAGCCCCTGAGCAGCCTCCCCAACCTGGAGAGGTTGGAGCTGCGACTGAACTTCATAAACAAAGTCAAACTGCAGACCTTCCACAACATCTCCTTGCTCAAGTACCTGGGGCTGGCGGAGAATGAAATCACCTTCCCAGTCCTCCGGGATCATCGAGGAAATGCACCTCACCACTTCGGCAGCCCACAGAACACCCTTCGGGCCTCCTCATCTGCTCTGCAGGATGCAGGACACAGTGACCCCCCAGGAATTACATCACCTATCCATTTGATGCAGAGTTGCAGGTCCAACAACACTCTGAACCTCCGGAGGAACAACCTGGTTTTTATTAAGAAGGAGCTCTTCGAGGGACTGGAGCACATCGAGTGTCTGATTCTGTCCTACAACAGCATCAGCCAGTCCTTCACCGGACATGAGTTCACCAGCCTGAGGAGCCTGAGGGTGCTGGACCTCTCCTACAACAGGATCAACTTGTACTTTAAGGAGGCCTTCTCCgagctgcagcagctggaggTGCTGGACCTCAGCCACAACAACTACCACTTTGAGATGAATGGGATGGGGCACAAGCTGACCTTCATCGCCGGACTCCCCTCCCTCAAGATTCTAAACCTGGGCTTCAACTCGATCAAGGACCGCATCACCACAGCACTGCAGAGCACCTCGCTGGAGGTGCTGATTTTCAGGAAGAACCGCTTGGACATAATGTGGGACAAGGAACTCTACAGCAGGTTCTTTCAGAATCTTACCAGCTTAATCGAACTGGACCTGTCTATGAATCAGCTGACCCACATCCCACCTGAGGTCCTACTCAACCTACCACCCACTGTGAGGAATCTGTCCCTGCAGAACAACAAGCTCACCACCTTCCCGTGGGAGGCGCTGAGTGCTCTACCTGCTCTGGAGCGCCTGGACCTGAGTTCCAACCTCTTCTCTGTCCTCTCCAGAAGCACTCTGCCAGGCCTTTACTTTCCCCCACATGCCAGCATCCAGAGCCTTAACGTGAGCTTCAACAAGATCAACAGGATTGACAGGGACTTCTTCAAAAATGCCACCCAGCTCTCCAAACTGCTCCTGAGCGACAACGAGATGCGGGAGGTCGACTTCACAGACTGCCTGCTCACCCGGCTGGAAGTGCTGGACATCCGCAGGAACTCCCTGAGCTGCAGCTGCGACTCCACCTTATACACATTTGTCAGCAAGTTCAACTTCTCCATCCCTGCCCTGACCAACCAGGTGACCTGCGGCTCCCCGGAGGAGCTCAGGGGCAAGAGCATCTTCAGCAAGGATGCCAAACTCTGCCAAGGCACACTCAGCCtactcttcttcctcttctcatCCCTCCTGATTGTCCTGTTCACGTTGTTGCCCTTACTGAAGCAGCTCCTGGGCTGGGATGTGTGGTACACCTTCTACGTGTGGGTGGCCCAGTCCTGGGGCTCCCTCTACCGGTGCGGTGCGAGCAAGGAGTATGACGCCTTCGTGGTGTTCGACAAGGAGCAGGAGAGCGTGTCTGACTGGGTCTATAACGAGCTGCGGGTGCAGCTGGAGGAGGGTGGCCTGCAGAGCTTCAAGCTGTGCCTGGAGGAGAGAGACTGGATCCCCGGGCAGTCAGCCATCGAGAACCTGTACGATGCCGTGCACAACAGCAAGAAGACCGTGTTCATCCTGTCCGGGGACCAGTCGGCCAGCGGCGTCTTGAGGGAGGCCTTCTTCATGACCCAGCAGAGGCTCCTAGACGACAGCGAGGACGTAGCGGTGTTTGTGCTGCTGGGCAGGACACCGCGTGGCTCCCGCTTCCTGAAGCTGCGGAGGCTGCTGTGCCGCGAGACGGTGCTGCTGTGGCCCAACAACCCCCACGCCCAGGGCTACTTCTGGCACCGCCTGCGCTGCATCCTGCGCAAGGACATCTGGAGCAGCTACGACCGCAAGTTTAGCCTCGGCTTCGAAGGCTCATGA

Function

GO: NA

KEGG:

id description
K10161 TLR9, CD289; toll-like receptor 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017279 True 3042 mRNA 0.59 1 52757463 52760504

Neighbor

gene id symbol gene type direction distance location
AMCG00017275 NA coding upstream 13572 52741163 ~ 52743891 (+)
AMCG00017267 NA coding upstream 343552 52384020 ~ 52413911 (+)
AMCG00017253 cacna2d3,LOC103362818 coding upstream 742308 52005220 ~ 52015155 (+)
AMCG00017252 cacna2d3,LOC103362818 coding upstream 772095 51948217 ~ 51985368 (+)
AMCG00017247 NA coding upstream 912609 51838583 ~ 51844854 (+)
AMCG00017288 NA coding downstream 157548 52918052 ~ 52922397 (+)
AMCG00017290 NA coding downstream 169986 52930490 ~ 52933688 (+)
AMCG00017289 acy1,LOC105933287 coding downstream 176396 52936900 ~ 52951955 (+)
AMCG00017297 cacna2d2,LOC107666002,LOC102776731 coding downstream 494163 53254667 ~ 53275017 (+)
AMCG00017301 NA coding downstream 525925 53286429 ~ 53302089 (+)
G19515 NA non-coding upstream 209432 52547749 ~ 52548031 (+)
G19465 NA non-coding upstream 641122 52106948 ~ 52116341 (+)
G19366 NA non-coding upstream 1185469 51565289 ~ 51571994 (+)
G19292 NA non-coding upstream 1417346 51339913 ~ 51340117 (+)
G19275 NA non-coding upstream 1460745 51295832 ~ 51296718 (+)
G19588 NA non-coding downstream 36428 52796932 ~ 52802211 (+)
G19591 NA non-coding downstream 90427 52850931 ~ 52854722 (+)
G19617 NA non-coding downstream 97649 52858153 ~ 52863723 (+)
G19641 NA non-coding downstream 173260 52933764 ~ 52935403 (+)
G19660 NA non-coding downstream 246656 53007160 ~ 53007531 (+)
G19114 raf1,LOC108276324 other upstream 2194185 50559450 ~ 50563278 (+)
G19113 NA other upstream 2204478 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 3029896 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 3353618 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 3375245 49372022 ~ 49382218 (+)
AMCG00017280 NA other downstream 53749 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 60557 52821061 ~ 52834042 (+)
G19683 NA other downstream 575405 53335909 ~ 53339655 (+)
G19754 NA other downstream 742928 53503432 ~ 53536464 (+)
G19829 NA other downstream 1030043 53790547 ~ 53792694 (+)

Expression


Co-expression Network