AMCG00017280


Basic Information

Item Value
gene id AMCG00017280
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52814253 ~ 52817369 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017280
GTGAAAGAGCTGAAACGCCGCTGTGAAAAGGATCAGGGTGCGACTCGGCCAGCGATTCGTTCTGTCTGAACGGTGCAGTACGGGCTTGCGCATGCGCTCCACCTCAGTGAGGAGCGCAGAGGAGCGGGAGGGTGCAGCCTCTCTGTGTTtacaaataatactaatcaaaatcacttttattattattaatatttgtaaattaaacgGCTTGCATTTGATAACGGGCGCCACTGTCTGTCACGGAGCTACGTGTAACGAATCTGCCAGCGTGGGATGACAGTGTGACAGCAGACAGCGTCTCTCGGTGGAAAATGGAGGCTGTGGCCGCCGGGCCCGTCTCGCCCTGCTGACGGCACCGCGGGCGGCCGCTGCTCCACACGGCATGGCGCCGGGCTGTCACTCTCGCCGGGCAGGAGAGCCGTCGCTGTGAGGGATGGACGAGCCGTGGGACTGCGAGTTCGTGTCGCGCCTGCTGGACGGCCTGGTGTCGTTCCTGAGCGAGTTCGCGGAGGACTGGCTGGCCAACGACATGCGGGCGGCCGTGTTCAAGATCCTGCTGGCCTGGGTCGTGCTCAGCCTCGTCGCCATCCACTTCGCCTGGAAGGTCTACGGACACACGGTCAACGACATGTACTACAGACAGGgaacCGGCGGTCAGAACGGCGGCACCCCCGAGACTACGCCTCACCTCAGTGGCTGGGAGAGCGCGACGACGAGTGACGCCTTCAAGACGCACCGGGAGTGAGCCGGTCGGCCACCCACTGCCTGCACCTGGCCAGTCGGACTACAATACGCTGTGTCTCTGGCCAattggtggaggaggaggaggagtagtGTGTCCCTGGCTGCCTGTCCCGTCCCAGTCATTCCAGCTGGTCCACACCGCGGCACAGCCTCAGACACAGCAGAGTGCTGGACACTGGCAGAGATGCCGAGTTTTACCTTCCGAGGCTGGAGGACAGGGTGCGCGGGTTCTAGTCCAGTCCGATTGGTTCCATCTTCTCCTCTGTCTCTTTGCCCCCTCAGCCTCGGTGCATGAAGGCAGGACAGCATGGCCGCCAgaatggaattgttttgttggGGGGGCAGCTGCCCTTCCGGCCCGGATGCTTCGCACTGCCTGCAGGAACCCGCTGGGGTCCGTCTGCgggtcggtgtgtgtgtgtgtgggcacaCAGACTGGACTGATGATACTGTGGAGCAGGAATAACACTGTTCGTAAATAATAACCTTAATATccataataattaatgaataaccATCAGCTCTGAAAGTGTGATTTGATTTAGAATTGTGTTGTTGTGATGCTGTGGTTTAAAATGCTTGGTTTGCCTTGAGAGTCTTGGCTGTCCCTAATGGAagtgagaataaaataatggagAATGTGCTGGGATCTGGCCTGGGGTTTGTGGGGGGGGCAGCCCAGCCCTCAGTGACTGGAACGGACCACCGACTTGCCCTGATCAGACCTCAGAGAGGGAGTTTTAAACCGTCTGGGATTGCAGGTTCATTATAGAATCATATAAAGCATTTGATTGAATTCTCAGGCTTCCTGTCCGCtttaatttaagtcaaataaagCTAATTGTGAGTTCAAGTAAGTGACTGGCAGCTGAGTGGGGGGGCTTCACCTGTAACACAGATGTTGAAACGACGGAATGTAACATTGAAATAATAGGAGTGCACTTTCAAATCGAAAAAATGTTGTGTGACTTGACTAAATGTTCCAGATGGCAGTAGTAGACACGCTTGTGTAGAAATGCTGTGGTCTGTTCATCTTCAGGCCTGTTTAGAGCGCTCTGAACCTTGACCTTTCACCTCTGACCCCATCTGCTCTAACCTCCTGCCCTGCTGTGGATGACTTCCTGCTCCTGGTCTGTTGAGTAATAAAt
>TU24289
GCCAAATGTAAATCATACTCAGACTCATGACACACCgataaatacagtattatcaCACAATCCTCTATCAAATCTGACCTATGTCATAATATATGCCTAGGAAACAATCGTAGTTGAGAGAATATGAATAatttcataaattaatattgttattgtggTAGTCACTGATTGTCCACATGGTGCTGCGGGGCACGTTTGAGGGATGGGGGGTGAAAGAGCTGAAACGCCGCTGTGAAAAGGATCAGGGTGCGACTCGGCCAGCGATTCGTTCTGTCTGAACGGTGCAGTACGGGCTTGCGCATGCGCTCCACCTCAGTGAGGAGCGCAGAGGAGCGGGAGGGTGCAGCCTCTCTGTGTTtacaaataatactaatcaaaatcacttttattattattaatatttgtaaattaaacgGCTTGCATTTGATAACGGGCGCCACTGTCTGTCACGGAGCTACGTGTAACGAATCTGCCAGCGTGGGATGACAGTGTGACAGCAGACAGCGTCTCTCGGTGGAAAATGGAGGCTGTGGCCGCCGGGCCCGTCTCGCCCTGCTGACGGCACCGCGGGCGGCCGCTGCTCCACACGGCATGGCGCCGGGCTGTCACTCTCGCCGGGCAGGAGAGCCGTCGCTGTGAGGGATGGACGAGCCGTGGGACTGCGAGTTCGTGTCGCGCCTGCTGGACGGCCTGGTGTCGTTCCTGAGCGAGTTCGCGGAGGACTGGCTGGCCAACGACATGCGGGCGGCCGTGTTCAAGATCCTGCTGGCCTGGGTCGTGCTCAGCCTCGTCGCCATCCACTTCGCCTGGAAGGTCTACGGACACACGGTCAACGACATGTACTACAGACAGGgaacCGGCGGTCAGAACGGCGGCACCCCCGAGACTACGCCTCACCTCAGTGGCTGGGAGAGCGCGACGACGAGTGACGCCTTCAAGACGCACCGGGAGTGAGCCGGTCGGCCACCCACTGCCTGCACCTGGCCAGTCGGACTACAATACGCTGTGTCTCTGGCCAattggtggaggaggaggaggagtagtGTGTCCCTGGCTGCCTGTCCCGTCCCAGTCATTCCAGCTGGTCCACACCGCGGCACAGCCTCAGACACAGCAGAGTGCTGGACACTGGCAGAGATGCCGAGTTTTACCTTCCGAGGCTGGAGGACAGGGTGCGCGGGTTCTAGTCCAGTCCGATTGGTTCCATCTTCTCCTCTGTCTCTTTGCCCCCTCAGCCTCGGTGCATGAAGGCAGGACAGCATGGCCGCCAgaatggaattgttttgttggGGGGGCAGCTGCCCTTCCGGCCCGGATGCTTCGCACTGCCTGCAGGAACCCGCTGGGGTCCGTCTGCgggtcggtgtgtgtgtgtgtgggcacaCAGACTGGACTGATGATACTGTGGAGCAGGAATAACACTGTTCGTAAATAATAACCTTAATATccataataattaatgaataaccATCAGCTCTGAAAGTGTGATTTGATTTAGAATTGTGTTGTTGTGATGCTGTGGTTTAAAATGCTTGGTTTGCCTTGAGAGTCTTGGCTGTCCCTAATGGAagtgagaataaaataatggagAATGTGCTGGGATCTGGCCTGGGGTTTGTGGGGGGGGCAGCCCAGCCCTCAGTGACTGGAACGGACCACCGACTTGCCCTGATCAGACCTCAGAGAGGGAGTTTTAAACCGTCTGGGATTGCAGGTTCATTATAGAATCATATAAAGCATTTGATTGAATTCTCAGGCTTCCTGTCCGCtttaatttaagtcaaataaagCTAATTGTGAGTTCAAGTAAGTGACTGGCAGCTGAGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017280 True 1892 mRNA 0.54 3 52814462 52817369
TU24289 False 1830 TUCP 0.54 3 52814253 52817098

Neighbor

gene id symbol gene type direction distance location
AMCG00017279 NA coding upstream 53749 52757463 ~ 52760504 (+)
AMCG00017275 NA coding upstream 70362 52741163 ~ 52743891 (+)
AMCG00017267 NA coding upstream 400342 52384020 ~ 52413911 (+)
AMCG00017253 cacna2d3,LOC103362818 coding upstream 799098 52005220 ~ 52015155 (+)
AMCG00017252 cacna2d3,LOC103362818 coding upstream 828885 51948217 ~ 51985368 (+)
AMCG00017288 NA coding downstream 100683 52918052 ~ 52922397 (+)
AMCG00017290 NA coding downstream 113121 52930490 ~ 52933688 (+)
AMCG00017289 acy1,LOC105933287 coding downstream 119531 52936900 ~ 52951955 (+)
AMCG00017297 cacna2d2,LOC107666002,LOC102776731 coding downstream 437298 53254667 ~ 53275017 (+)
AMCG00017301 NA coding downstream 469060 53286429 ~ 53302089 (+)
G19588 NA non-coding upstream 12042 52796932 ~ 52802211 (+)
G19515 NA non-coding upstream 266222 52547749 ~ 52548031 (+)
G19465 NA non-coding upstream 697912 52106948 ~ 52116341 (+)
G19366 NA non-coding upstream 1242259 51565289 ~ 51571994 (+)
G19292 NA non-coding upstream 1474136 51339913 ~ 51340117 (+)
G19591 NA non-coding downstream 33562 52850931 ~ 52854722 (+)
G19617 NA non-coding downstream 40784 52858153 ~ 52863723 (+)
G19641 NA non-coding downstream 116395 52933764 ~ 52935403 (+)
G19660 NA non-coding downstream 189791 53007160 ~ 53007531 (+)
G19664 NA non-coding downstream 207256 53024625 ~ 53024934 (+)
G19114 raf1,LOC108276324 other upstream 2250975 50559450 ~ 50563278 (+)
G19113 NA other upstream 2261268 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 3086686 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 3410408 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 3432035 49372022 ~ 49382218 (+)
AMCG00017287 NA other downstream 3692 52821061 ~ 52834042 (+)
G19683 NA other downstream 518540 53335909 ~ 53339655 (+)
G19754 NA other downstream 686063 53503432 ~ 53536464 (+)
G19829 NA other downstream 973178 53790547 ~ 53792694 (+)
AMCG00017325 nckipsd other downstream 977257 53794626 ~ 53805796 (+)

Expression


Co-expression Network