AMCG00017281


Basic Information

Item Value
gene id AMCG00017281
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52844864 ~ 52853582 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017281
CTGGACCGCCAGCAGTGAGTAGACCTGATAAAGAGTCAGTTATTTAGAAGACAATCAATTGAATTCGGCGTGTGCGTGTATATCCTGATACAAAGTGAACAAAGACGCAGTTTGAAAGTGTATCTGTTGCGATATATCCGGTCGATGCTCCTTGTCCCCCCCGCGGCCCTGTGTGACTGCGCCGCGCCGGCAGCGCCGCTCCAGCCCGGGGGAAGCTCGGCAGAGACGCGGGGCTGCGGGAGGAGGCGGGTCGCGGCGGCGGAACAATAGGATGGAGAAAGAAAGTCCCAGCGAACCCAGCAGCACGAgtttccatattaaaaaaaccCGGGCTGGTCGTGTGTGGCTGTTGTGTCAGAGCCGAGCCGGGATGACTGCGGTTCCAGGTCCAGTTTCCCGGGCGCGATGAAAGCGCTCGGCCGTCAGCTGCACCTTTACCGAGGGGATTTCAGCGGACAGCAGACACCCAAGCGCCTGTGAAATCCACTCTCCTGCTGCCATCATGTCTTGTATCATTTGCTTCCTGCCAGTCTGGGTCTTCTGTCTGGTCCCCCTTATGAGGTCGCAGTCCTGCTGGACTGGTCAGATGAAGTCAGCCAGACGTCCCCTTCTGTCCAACAAACCCCTGCTCTTAGCCTGGAACGCCCCAACAGAGGACTGCCGGCCGCGCCACAAGGTCATCTTCAACCTGGAGCAGTTTGAGATCACCGCTTCCCCCAACGAGGGCTTTGTGGGGCAGAATCTCACCATCTTCTACAAAGACAGGCTGGGGCTGTACCCGTACTATGAGAAAGATCAGACCGCCGTCAACGGGGGGCTCCCCCAGCTCAGTAGCCTCCAAGATCACCTGCAGAAGATACCCAACGGGGTGAACAAGTACATTCGGGACCGTGACGCCAAGGGGCTGGCTGTCATCGACTGGGAAGAGTGGCGCCCGCTGTGGATACGCAACTGGGACAGCAAGGACGTTTACCGCAACGTGTCGCGTGTCCTCGTCTCCAGTAAGAACCCCAGGTACACCAAGGAGGCGGTGAACAGGGTGGCGCAGCAGGAGTTCGAGCTGTCAGCCAAGAATTTCATGCTGTGTACGCTGAAGGAGGCCAAACACCTGCGGCCCAACCAGCTGTGGGGCTTCTACCTGTTCCCCGACTGCTACAACCACGACTACAAGAACTCCCTGGAAAACTACACGGGCCGCTGTCCCGATGTGGAGGTCAGCCGCAACGACCAGCTGGCCTGGCTGTGGGAAGAGAGCACCGCCCTGTACCCCTCCATCTACATGGGCACCGTGCTCCGGTCCTCCGGCTTCGGCCGCCAGTTCGTTCGCAACCGCGTGAAGGAAGCCATGCGGCTGGCCTCAGTCGGGGATGGACCAGCACGCCCCGTCTTTGTTTACGCGCGGCCCACCTACACTAATGAGATGACCCTGCTGACGGAGTTTGATCTGGTCTCCACAATTGGGGAGAGTGTGTCTTTGGGAGCCGCTGGCATTATCTTCTGGGGAGACTCCACCTATGCCAGCAGCAACGCTAGCTGCACAAAATTGAAAGACTACCTGCAGGGGGCGCTTGGCCGGTACCTGCTGAACGTGTCCACAGCGGCAGAGTGGTGCAGCAGGGAGAGGTGCAGCTCTAATGGCCGCTGCATGCGGAAAAACCCCAACGAGGACGCGTACCTCCACCTGAACCCTGCCAGCTTCACCATCCTGCAGAAGGGAGGCAGCCTGAAGGTGCATGGTCAGCTGAGCGCGGGCGACCGGGACACGTTCCAGCGGCAGTTCTGCTGTCACTGCTACACTGGGTACAAGGAGGACTCCTGCACCCAGACTGAGACCGGGCAGCGCTGGGGCCACTCCCCGGGCCTGAGGACCACTGTGACCAGCCTTCTGCCTTCGCTCGGCCTCTTGTGGCTGCTATTCTAGAGCAGGGGCCCACGGCCACCCCTGCAGAAAAACAGGATCCCTTACCCAGCAAGGACCGCTCCTCGGCCAAACATGGCAGATGTTCGCTACCCGTCAGTCCTGGTAGTGCTCTACAGATGGAGGAGAAGAAGTGAAGAgggatttgtgttttaatttgtagtACTTCTTCCTGATATGGTGCCTTCTTGGGGAAGGGTGCACAGACAGCTTGTGGCTGTATGCAGTTGCCAAGCATTTAGAGAGAAAAGTGAGTTAGAAAACAAAGCAGTTTCCCAGATAACCTGTTTACAGATCCCCCTTTTTTCTGTGTGTCCGCATCATAGAGGGAGAGAGCTGAGGGGCAGCCTGACCAGGGAAGCGATCCCCACAATGAGCTCTCCAGTCCACCAGCATTTCTACAACAATACTAGTGGTATCGTTTCCATTTCAGATACGAGACATTGATCTCAAATGTGCCTATAAAAGAAACTCTGCGAAGCAGTCCAGCTGTGCCAGTAAACCACACTCCCCTGGGCTGGTGCAATTGTGAAACTTTGAAGCCAAATATCTCTGGAGGATTTGAATCTGTTCTCTCCTCATTCTGTTCCACTATTGTCTCAGACCTAATCCAGATCTCTgaaatgggttttgtttttgttcttcctaTGTCTGCATTTCTTTCGAGTACGTGTAGAAGCACTGTGCTGTACGAGCCTTCTTCACACTTTCTGAATTGtcttttactgatttattttctattcatcCACTCTCACTAGTGTCTGATTACACTCCCTACTTTATATTGTGAGGGATATAATGCAGCAAtgcaaaaagtaaataatggaaacacagcaaaaacaacCTGGGAAAACAGTGCAATCATAGCTTCACTTTTAAACTTGCAGTGTCTTGATTCTTGATGTTGGAAACACAAGGAACTTTAACTTAGTTCTGGAAATTGATTGaatctttatatgtatttgttttaattgtaagcAATATTTTTGTGGATAAAACTggaactttaaaatgtttgaaattgctgttcatgtctgtgtgtggatgaTTGTGATAATGTATGTGTAAATGACTAATACACAGACTGGCTGCAAATAATACTCATTGAATAACATTgatccttttttatttgctaTAGACATTTTCTCTTAATTCTACTGATGAAACATAAATATCTATCAAACCCTCTTAACAAATGTGAAATCTCTCGCACAATGTGTgctaatataaaaatgtgcCAACTGTTGTACCTGCAGTGCATCAGGCCTGCTCTGTCCTGTCTTCcttgcacagacacacaccctaTTGTACCAGCAGTgttaacacacacattaaccACCGTCCACTATTTATCAATGGCTTGCAGGCCCTCCCTCGGCCTTCCTGCTGCAGTCTGGGTGTGACGCTTTTCCGCCCCTGTTCCTCTAGGCTCTTCGTCCCGCAGGGCGTTGAGGTGCCACTGCAAACGTAGGTTTCGGTTCATACACAGGACTGAGCTCAGAGATTTTAACCGTTTCCtccttacattattttcttttctttttcaaagcgCTGTTACCTTTGCAGCTTCGTTTGCCAAGAAGCAGAACTCACTGGCGGTCATGGCATgcttataaaacaaaaacaaccaaaatacaaaatagagtTTAAAACGAATGTTCGGGAGGAGAAGAACCCCCCCAATGCCACATCACTGCCCCAAGCAGAGCCAGTGAGATATGCCCTCACGTTCACAAACCATCATGCTTCATGCCTGCATGTCTCCGAACACCATCCCTCCGCCCCCCGGGCTCTGCCCACCTAGTGGGGGGTTCTGATGCCTCAAGGTCAGCCAAGCGGTTTAAACCCAAACTCTCATTACTTCAATCACTACTTCTACCAGCTACTTCTATAGAGGTTTGTCTGAagtactgaaacaaaataaatatgttgttcCAGTCTAAACCACGAGACACGGGTCAGGGTGCTGTGGATAGAAGTTCTGCTAACTGGTTTGTACATGTGATAATGTTTGTCCAGGGGGACAGCTGTGTGGCAATAGCTGTATTGACTGATGACTGTTAAGCCTTTGAGCAATTGCAAAATACGAGTACCAGTCCATCCTGAAATTCTTTTCATCAAAGCCACGCACCACGGGGGCAGGACATGAGTGTAAAAGCTCTGCTGGTTTCCCTTGATACCTAGTAAACCTTGAAATAATCGCACATTGCCTCTGACCTGCCAGTGCTCTCGGGcaatttagtgtgtgtgtgtattaatgtgaTGTTATAAATATGAAGTACGTACAATGAATGCTTTCCGTATCCtaaaaaaaacctttatttgttttatatgacaatccacacacaacacacatgcacagagacAATGTACTTCTGTCACATCAAGGTATAAACATTtaatctttttgtatttgtgacCGATATTTGCACAGaatgttttttccagattgtgtTGTAGGAGAGCTGTTCTCAAGCCCACAGACAGAATAGTTATACTGGAATGATTTCTGTATAATTCATGTGACCTTAAGAATGGAGAATTCCTGTGGAGTTTCAacttaatacaaattaaagccCATGTTtgtgacacatttaaaaacaaaataaatctaccCCACTACATAAAAGTGTCCAGGTCAATATGAGCATCACGTCTCAGGGCGATGATCTTATCAGATTGTGTGAATGGGCGCAGTGTACATGACAGTCAGAAAAGCAATCCCACCATCATTATACAACCcttgttttttaacttttatttttctcttgctgGCCTTTCCTGAtgggacattttatttttatgttttattttttcttctttgggaTCCCTTCCAAAATAGGGCGAACCGTTGCTGCCAAAAGTAATATTATTGGTCTTGAAGCACAGAGAAAGCCTTGTTTTCTAACTTAAACCAGACCCTGAGCAGCGCACCCTGGGATCTCTTCAATTTACTAGCTTTTGCTCCCTGACCCCCCAGCAGGGGCAAGACCTACAGTCTGCTGGAGTGTTTGTCAGACTCACTGAAGTAGTTTTAATGCTTCCCTACCACAACTATGTCCATGATAGAagagcacatacacacaaagcATACACTTCTCTCTGATTACATTCTCTGCCCTGAGGCACACGGCTGAGAGGAGATCAGTTCAGTTTGATGGGAAAATAATAGGAGCTTGGCTTGTTGCTTGACTGACTCAGAAGGTAATGTTAGTTTGGAGGGGATCCCTTGGGAGCTTTGGGCTCTAGTGCCTGTGTGGCTGGCTTTAAAAGACATTACAGTCAAGTTGAGTCATTGATCACATTGTTACACCCAGAGATTCAGAGCCACAAGGTGTCACTGTTCAATTGGCTACCTGTTAAGATGTTTCAATGCACTGTCAAGCTTCACAGTTTCCTTCAGTCCCAGTGTGAttcttaataaataatgtgag

Function

GO: NA

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017281 True 5352 mRNA 0.49 4 52844864 52853582

Neighbor

gene id symbol gene type direction distance location
AMCG00017285 NA coding downstream 4220 52838503 ~ 52840644 (-)
AMCG00017282 NA coding downstream 23747 52818039 ~ 52821117 (-)
AMCG00017286 NA coding downstream 30019 52811847 ~ 52814845 (-)
AMCG00017283 LOC105025252,LOC106572261,LOC106566794,LOC100710477,LOC108425062,LOC101076147,LOC103027457,LOC104949002 coding downstream 38433 52803720 ~ 52806431 (-)
AMCG00017284 NA coding downstream 49014 52772129 ~ 52795850 (-)
AMCG00017295 NA coding upstream 14745 52868327 ~ 52881013 (-)
AMCG00017296 NA coding upstream 30893 52884475 ~ 52900125 (-)
AMCG00017294 NA coding upstream 50758 52904340 ~ 52912643 (-)
AMCG00017293 nprl2 coding upstream 59241 52912823 ~ 52917944 (-)
AMCG00017291 tmem115 coding upstream 71241 52924823 ~ 52929839 (-)
G19604 NA non-coding downstream 75449 52768902 ~ 52769415 (-)
G19551 NA non-coding downstream 153678 52679953 ~ 52691186 (-)
G19548 NA non-coding downstream 179682 52649008 ~ 52665182 (-)
G19516 NA non-coding downstream 296814 52547737 ~ 52548050 (-)
G19330 NA non-coding downstream 1406771 51437880 ~ 51438093 (-)
G19663 NA non-coding upstream 156296 53009878 ~ 53010218 (-)
G19687 NA non-coding upstream 384624 53238206 ~ 53238409 (-)
G19741 NA non-coding upstream 564603 53418185 ~ 53419077 (-)
G19873 NA non-coding upstream 1000401 53853983 ~ 53854628 (-)
G19875 NA non-coding upstream 1011328 53864910 ~ 53868777 (-)
AMCG00017251 actr8 other downstream 984597 51846596 ~ 51860267 (-)
G19335 NA other downstream 1395078 51445587 ~ 51449786 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other downstream 1409625 51430687 ~ 51435239 (-)
AMCG00017232 NA other downstream 1632491 51184231 ~ 51212373 (-)
AMCG00017178 NA other downstream 3350720 49487197 ~ 49494144 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 4758 52858340 ~ 52866435 (-)
AMCG00017299 NA other upstream 341251 53194833 ~ 53215336 (-)
G19730 NA other upstream 529758 53383340 ~ 53387709 (-)
AMCG00017313 NA other upstream 598536 53452118 ~ 53531131 (-)
G19808 NA other upstream 822501 53676083 ~ 53728883 (-)

Expression


Co-expression Network