AMCG00017288


Basic Information

Item Value
gene id AMCG00017288
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52918052 ~ 52922397 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017288
CGAACGTCATTGGTTCACTAGACCGGCGCGGATTTGCGTAGGTCACGTTTGCCTGGTCACTCTGCTGCTATAGGCGGAGATTGTTGTGATTGACAGGCGCGCTGGTTTCCGCTGTGCTGGGATCAGAGGACGCCGCCGGGCCGAGCTGATTGGCTGCGTTGGCACTTTGTTTGCGTTCAAAATCAATGTAACTCGGATTTCTGTGATTGACACAATATCATCACGGCAGCCTTCCGTCCGCTGCGAGACAGACATTGTTTCATACAGATCTAGCGGGTGCCGGGGTTTCACTGCACAAGAGGGTGACCCGGACACAGCGCCCCCCTGAGGAGAGGCAGTGACAGCTGGGCCTCTCTGGATGGGGCTGCCCTTGACGAGGCTCTCGCCCTGACCTTGTGACCGGGAGAGTGTGAGGATGGTGCAGGCGCTGGAGCCCGAGCCCAGGGTGTACGGCCTGCTGAGGCGAGCCTCCGGCGTGGCCGCGCACCTGCTGTGTCTGGGCTTCACTGTGTTTGTGGCGGTGCTGGCCCGGCCCGGGACCAGTTTGTTCTCTTGGCATCCGTTCCTGATGACCCTCTCAttctcGTTCCTCATGACGGAGGCCCTGCTCCTCTTCTCCCCAGACTGCTCTCCGCTCCAGCACTTCTCTCACAAGGTGAAAGGTCGCTACCACTGGATCCTGCAGAGCCTGTCTGcctcctgtgctgtgctgggacTGGTGGTCATCTTCTACAACAAGCAGCTCAACAACAAGTCGCACTTCGTCACGTGGCACGGCCTGGTGGGCCTGCTGACCGTCCTGTATGCGGTGCTGCAGTCCCTGGGGGGGGTCTCCCTGCTGTATCCCAAGCTGGTGAAGCGCTGGTCTCTGTCCAAGCTCAAGCGCTACCATGCCACCTCGGGCCTCCTGGCCTACCTGCTGGGCTGCACCAGCCTCCTGCTGGGCATGTGCTCCCTGTGGTTCACCACCGCAGTGCATAGCCTGGGCTGGTACCTGGCCTCTTCCTGCCCCGCCCTCACCGGCCTGGTCCTCATGAACCAGGTGACCAACGCTTACGTGGCCAGGAAGCGCTTCTAGTCTGTGGCTCGAACAGATGCCCTTCTGCCACACGATTGCGCACTTAGGAAGTCTCCTAATGGGGGTGACACAAACGCTCCCCAGGTACAAAATATgtcctttttaaattgtaggaATTGGAAGATGTCTGTAGAGTTCTGATTAAGTATTATAATTTCTCCGCTTGCTTCTTGGCCTAAATCAAAGGAAGGGCTTCACCTGGAGAGAGACATCCTTGTTGACGAGTATTGGACGAGGCTTTGAACCAGGGGTGGAGATACACAAGTGCCAGGGGCTGGTTTTTTATACTTCTTACCTATTCTGAGAACGGTTGTACGGAACGACACGTGGAGTTGAAATAAATCTGTGATGCGTTTGGGCTTCATGCATACCGTTGTGACGGGCTCTGCAGCTCCTACGATCTGTCTGGGTCAGAGTGCAAGTCTTCCTCTCCTGCTGTGAATGTGGAAAGGGCATTAATGCAGCAGGGGACCTCTGTGTCTCAGGGTCTCCATCGGAGCACTTGTGTTCAAGGCTTTTTtaactgcagtgtttctgtCAGTGCAGTGTCTACAGCAGTGCTTCTGTCTTTTAAACGAGTGCTTTCTCATTCTCCCCAGTTTGTAAACCAAGTCCCTAATCTGTTCTGTTCCTTTCTGGTCAAGATGAAATGAAGCCGACTCTGTTGTCGGGTCACAATAACAATTGCCATCGTGCAGTGCTGATTAAATCCCTACACTAGCGAATGAGTGTCTGGGACAGTATGTTTATATACATCTTCCTGTCCTTCATAAAATGTATCTATAGTCCAGTCATTCATAAAGCCATTGTCTGAAtaggaggggaggggggcttGTACGAGGTAAATGCTACTGCATTGTTAATCTGGAATAAAGAAACCCTAAAACACCAGAAGGTTCCGGTACAACTATATCTGAATACGGAAGAGGCCGCTTAAAGATCTGATTGTACGACAGAGTGGCGGCTCTGATGATATTCTTGAGAGAGAGATTGTCTTGATTTTCAGTGTGTGGAGAGTGTAATGAATTTGATATGTCAAATCTCGCATGCCGTTGGGGAGAGTGATGTCAAAGTAACCTTTGCCTTATGTTAACcacaatcaaaatacatttgcttcCTGCAGGTCATAATTTTTACACACATTGttacttatatattttgaataacccaaagcaaaccaaaaaacaatggCACAGgaattatgtaatatatttttgtaaattttgtAAATTCCCAGTTCGGTACAAGTTGTCTTGAATTGGTGGAATAAACCCTGCTGATTGTACTTAATGCAAACCAaggtttttataaatattaacaaatgcaagaaaaaaataaaatctgcctCCCTGTACAGCTTGaacaatgtatatttgtttttaaatctgtccATTTGATTAATTTGCCTATTTTAAGTAACTTTTGCACTTCTATGCAGCAgtactgtactgaaataaaataagagaaacCCAATTCAATGGAgtattttcaattgttttgtttgcagagCCTGCTTAATTTAAGAACATGGCTATCTGTGCATATAGGGGTGACTAATATATATCCTTTAATGTGAATTTGTACTACAGTGGATTATATAAGATGTTTTGCCTTTAGAGCAG

Function

GO: NA

KEGG:

id description
K08371 CYB561D2; transmembrane reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017288 True 2700 mRNA 0.49 4 52918052 52922397

Neighbor

gene id symbol gene type direction distance location
AMCG00017279 NA coding upstream 157548 52757463 ~ 52760504 (+)
AMCG00017275 NA coding upstream 174161 52741163 ~ 52743891 (+)
AMCG00017267 NA coding upstream 504141 52384020 ~ 52413911 (+)
AMCG00017253 cacna2d3,LOC103362818 coding upstream 902897 52005220 ~ 52015155 (+)
AMCG00017252 cacna2d3,LOC103362818 coding upstream 932684 51948217 ~ 51985368 (+)
AMCG00017290 NA coding downstream 8093 52930490 ~ 52933688 (+)
AMCG00017289 acy1,LOC105933287 coding downstream 14503 52936900 ~ 52951955 (+)
AMCG00017297 cacna2d2,LOC107666002,LOC102776731 coding downstream 332270 53254667 ~ 53275017 (+)
AMCG00017301 NA coding downstream 364032 53286429 ~ 53302089 (+)
AMCG00017300 NA coding downstream 434184 53356581 ~ 53363297 (+)
G19617 NA non-coding upstream 54329 52858153 ~ 52863723 (+)
G19591 NA non-coding upstream 63330 52850931 ~ 52854722 (+)
G19588 NA non-coding upstream 115841 52796932 ~ 52802211 (+)
G19515 NA non-coding upstream 370021 52547749 ~ 52548031 (+)
G19465 NA non-coding upstream 801711 52106948 ~ 52116341 (+)
G19641 NA non-coding downstream 11367 52933764 ~ 52935403 (+)
G19660 NA non-coding downstream 84763 53007160 ~ 53007531 (+)
G19664 NA non-coding downstream 102228 53024625 ~ 53024934 (+)
G19675 NA non-coding downstream 316709 53239106 ~ 53283206 (+)
G19674 NA non-coding downstream 354484 53276881 ~ 53320938 (+)
AMCG00017287 NA other upstream 84010 52821061 ~ 52834042 (+)
AMCG00017280 NA other upstream 100683 52814253 ~ 52817369 (+)
G19114 raf1,LOC108276324 other upstream 2354774 50559450 ~ 50563278 (+)
G19113 NA other upstream 2365067 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 3190485 49713467 ~ 49727567 (+)
G19683 NA other downstream 413512 53335909 ~ 53339655 (+)
G19754 NA other downstream 581035 53503432 ~ 53536464 (+)
G19829 NA other downstream 868150 53790547 ~ 53792694 (+)
AMCG00017325 nckipsd other downstream 872229 53794626 ~ 53805796 (+)
G19854 NA other downstream 931510 53853907 ~ 53855839 (+)

Expression


Co-expression Network