AMCG00017291 (tmem115)


Basic Information

Item Value
gene id AMCG00017291
gene name tmem115
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52924823 ~ 52929839 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017291
CAGGCGCGGTGGATGATCTTGTGTGCTGGTGACGGTGGCAGCGGTGAAGTTGCGCTGGGAGTGTCACGATAGTTCACAACACACCTAGACATATTTAGGATCATAGTCATCTGGAAGTCTCGGTAAAGGGACAAAATAAAGCCCAGCGAACCGGCGAGCCGCCCCACAGCCTGGCCGCCCGAGAAGGCTTCTGTCACTTTAATTTCCACCGCCGGGGCCTGTGGAGGAAGGAGAGTCCTCGGGAAAACCTGTGGACGGAGGCCGacaggaggaggcagagagagggactgCGATCGCCGGAGACGTGTGCGGTCGTGCGGGGTAACACGTCTTCGCCTCCGTGACGAGGAGCCAGCCCGGGGTCCGCAGAAGGAGGACACGCAGAGGCCGCTTCCCTGGAGGTCTGAGTCAACGGAGGCTGTgaaagttttgttgttttgatttgtttttgtcaagttCGCCTCCATCCCCCCGCAGATGTGACTATTGGTCTCTCTCCGACACGGGACCAGCGCGTAATGAGTGCTAGTGGTAACAGGCATTTTCTTAAATGGGAAGAAAAGCTGCCACTCAAGCCGCAATACGAGGCGAGAGGACATCTGCTCAGAGCCAAGTGCAAAGACTGCATCTTAGTGATGTAAGAATGAGCCGCAAATGTGCGTGAACCCTGGCCTGGATGACAAAGGCCTCCTTCTCGACCGCTGTctattaattatttagtttcctttcttttttttattacattttctttgctttttaagTGTAAGGAACGATCACTCCTCAAGCTCTACTGAGAAGCTCAAGCTGCTATCGGTGTGACTGTGTCCTGGGCTCCTGTCACTCATCAGAGCTGCACACTTCCCAATGAGAGGCCTGGTTTCGCTCTAGTGTCTGAGTCTGTCGCAACAGCAGTGCATCAGCTGCTTGCTTGAATGCTGCCACTCCTTGAACTCTGGATGTTGCCTCTTCAGTCTTGCTGTGGGTTCTTTGGCGTCTCTTCGCTTTGCTGTGCTTGGCTCTGCTAACTGAGCAAACTGAGCTCGCTGGGACTTTAGCTGCAGCCACAGGAGAGCCACACGAGTTATTCCAGGGGAACCACACTGGGTAGAGATGAACCGCTACCTGCCGGTGGCCCGACAGCACTTTTTGGCGGCGCTGGCCAGCACCAGCGTAGTGGTGAAAGCCATCTGTgccacagtcctgctgctgTACCTCCTGTCCTGGGTGGTGGACACCGTCTATGTCCTCGGGGTGACCCCGGGGTACCTCTTCCCCCCTAACTTCTGGATCTGGACTCTGGTCACGCATGCGGTAGTGGAGCAGCATGTGTGGGATGTGGCGGTCAGCCTGGGGACCGTGATTGCTGCTGGCCGGCTGCTGGAGCCCCTGTGGGGGGCCCTGGAGCTGCTTATTTTCTTCGCCGTGGTCAACATCTCTGTGGGGGTCCTGGCTGGCTTCTCCTACCTGCTCACCTACATTGCCTCCTTCAACCTGGACTACCTGTTTGCTGTGCACGTCCATGGCATGCTGGGCTTCTTGGGGGCGGTTCTGGTGGCCCTGAAGCAGACTATGGGGGACTCCACGGTCCTGCGTGTCCCCCAGGTGCGGCTGAAGGTGGCCCCCATGCTAGTCCTTCTGGTGCTGGCTCTGCTGCGCCTCACCACCCTGCTGGAGACCACCGCCCCGCTGGCAGCCTACGGGTACGGCGTCCTGTCGGGCTGGGTGTACCTGCGCTTCTACCAGAAGCACAGCCGCGGCCGGGGGGACATGTCGGACCACTTTGCCTTCGCGTCCTTTTTCCCGGAGGTCCTGCAGCCCATGGTGGGGCTGGTGGCGGGCCTGGTGCATAGCATCCTGGTCAAGATCAAGGTGTGCCGCAAGACGGTGAAGCGCTACGACGTGGGGGCCCCCTCatccatcaccatcagcctgcCGGGCACCGACCCCCAGGATGCCGAGAGGAGGAGGCAGCTGGCCCTCAAGGCTCTCAACGAGCGTCTGAAGAGAGTGGAGGACCAGTCGGCCTGGCCCAGCATGGAGGAtgaggaggacgaggacgaaGGCCGGGCTGATGTGCCTCTCCTCGGGGGCCGAGACGCGCCATTGTTGGCGGGGGCCTCCGGGGGGCTGCAGGGCTCCTCCGGGCAGGAGTCCAGCATCATCAGCTTCGAGGACGTGCCCTCCAAGTCCTAACGCAGAAAAGACTAACCCTGCACCCAGATGACgcccacacacactgacacacactcacacatacacacacacggacgGACCCCCCGCTCACGTGTCTCATAGCGAGGTTTGGGTCGAGGACcatgaataaacacaaatcgaaaacaaaacctacatcttttttttttttttggggtggaGCAGGGATGAGTGTGTGGGAACTCTGGCATCACTTTAATATCACTTTTATAAACAACCGGATGGGTGGAGGCAACTTATTCTTCTCTCTGGGCTAGTAGATCCCACCGGAGTCTGTGCGCTCCGCTGGCCGCGCCCGATGCCGGGATCCAGGGCTGGACTGCGTCCGTGTCGTTTCCTTACAGAAGTAGGTTTCAGCTGCCAGTGCTTCGGTCTCGCCGTGTGTAGGTCACCCTTTGTGCTGCAGTTAGTTATGGTTGTGTACTCTTTGTAAGCCTATCTTTTCCACAGAGAACTACAGACACCTTCCATACTTactcttttgtttagtttaatttgggTTTTCTTTAACTGGTTAGAAATCTATTTGTACTTCAATAAATCTTCAAACTTGTGAAATATTCTTCACTTTGTTGCTTTATCATTGAGATATGAATTCATTCAGAGGTCCCGGATCGTCAGAAGGATGAGCCCACGGCCGTGTGTCTAGGAGGCTCAGTTGGGTTCTTTCAAACACGCTGATCTGGCAGAATACAACaacagcagaagcagcagcaccACAACCTCTGTGTTGTATGCAATCTGGACATCCAGCTCATAATCTGGCTGTTTGATCTCTCCTTGCTTTGTGACATCACTTGATGTGTAAATTAATGTCAAATCTGTAAGAATCTGCAGTGTAAACTGGTTAAACATTTTCAGCCCCTTCTAAGGAAGAAAAGATCACTGCAGCTCCAGCTAACGCAGCAATAAAGCACGTCTATAACTAATGAAGCTTCCCCCAGACACGGGGAACTGTGTCACAGGCTAACGTACACTTTGTGCAGACTGGAATGTCTGTGCTAATTGATTAAATAGTGCCGacctttgtctttgtctttgtcttggTTGTGTGTGATGCTCACGTTTCAGAACACTACTGGTATCATGTATTCATCCCAAAGATCGGTGGACAGTTCTGTGTGTTTCAATAAATGACTGAACTCTCTCTTCTTttctaaatgtgtaataaaGGACTTGTATCTAAAACCTGTGGCCGGCCCTGTGGACTGCTAGGTTCTTGTCATTGCCGTGTCTACATTCTACATCCCATTTGTGGACTCTTGACTGAAGGAAGACAAAACAACCctgctgttactgttactgacacggttgtattttgtatatatggtTGATCTGACAGCCGATCCAAACCACGTTAGTTCAGCACAGAGGCTGGGGCG

Function

symbol description
tmem115 Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human TMEM115 (transmembrane protein 115).

NR:

description
PREDICTED: transmembrane protein 115

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017291 True 3593 mRNA 0.54 2 52924823 52929839

Neighbor

gene id symbol gene type direction distance location
AMCG00017293 nprl2 coding downstream 6879 52912823 ~ 52917944 (-)
AMCG00017294 NA coding downstream 12180 52904340 ~ 52912643 (-)
AMCG00017296 NA coding downstream 24698 52884475 ~ 52900125 (-)
AMCG00017295 NA coding downstream 43810 52868327 ~ 52881013 (-)
AMCG00017281 NA coding downstream 71241 52844864 ~ 52853582 (-)
AMCG00017298 NA coding upstream 352626 53282465 ~ 53286478 (-)
AMCG00017302 LOC107696462 coding upstream 409667 53339506 ~ 53343302 (-)
AMCG00017309 NA coding upstream 462869 53392708 ~ 53396408 (-)
AMCG00017310 NA coding upstream 466781 53396620 ~ 53396829 (-)
AMCG00017312 sema3b coding upstream 606008 53535847 ~ 53557888 (-)
G19604 NA non-coding downstream 155408 52768902 ~ 52769415 (-)
G19551 NA non-coding downstream 233637 52679953 ~ 52691186 (-)
G19548 NA non-coding downstream 259641 52649008 ~ 52665182 (-)
G19516 NA non-coding downstream 376773 52547737 ~ 52548050 (-)
G19330 NA non-coding downstream 1486730 51437880 ~ 51438093 (-)
G19663 NA non-coding upstream 80039 53009878 ~ 53010218 (-)
G19687 NA non-coding upstream 308367 53238206 ~ 53238409 (-)
G19741 NA non-coding upstream 488346 53418185 ~ 53419077 (-)
G19873 NA non-coding upstream 924144 53853983 ~ 53854628 (-)
G19875 NA non-coding upstream 935071 53864910 ~ 53868777 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other downstream 58388 52858340 ~ 52866435 (-)
AMCG00017251 actr8 other downstream 1064556 51846596 ~ 51860267 (-)
G19335 NA other downstream 1475037 51445587 ~ 51449786 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other downstream 1489584 51430687 ~ 51435239 (-)
AMCG00017232 NA other downstream 1712450 51184231 ~ 51212373 (-)
AMCG00017299 NA other upstream 264994 53194833 ~ 53215336 (-)
G19730 NA other upstream 453501 53383340 ~ 53387709 (-)
AMCG00017313 NA other upstream 522279 53452118 ~ 53531131 (-)
G19808 NA other upstream 746244 53676083 ~ 53728883 (-)
G19824 NA other upstream 833159 53762998 ~ 53764376 (-)

Expression


Co-expression Network