AMCG00017293 (nprl2)


Basic Information

Item Value
gene id AMCG00017293
gene name nprl2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52912823 ~ 52917944 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017293
CAGAGTGCGGGAATAAAAGCATTTCCGGGTTtcagtgtgttgttttctgtgctgTGGGTAATGAGCAGTAACAACTCACGCAgttcattcataataataatgaaaacaataacaataacaataatttaataagagCAAATAATTGGTCGGAATCTGACAGTAAAAATATTACTTTGAGTTAAGAGCGCTGCTCTACGTGTACTGTTACGGACGTGTTATTATGATGTCCACTGTTAAAGGGGTACCTGCATTGCCTGGATTGAAATGGTAACGTCACCAGGGATGCATCACGTTTAAATTGCGTTTGAATCACGCGGTGTCGAGTCAGTAGAGAGGCCATGGGCAGCAACAGCCAGATCGAGTGCATCTTCTTCAGCGAGTTCCACCCGACCCTGGGCCCGAAGATCACCTACCAGGTCCCAGAAGAGTATATCTCCCGGGAGCTCTTTGATACGGTGCAGGTTTACATCATCACCAAGCCTGAGCTGCAGAACAAACTCATCACAGTCACAGCGATGGAGAAGAAGCTGATCGGCTGCCCTGTGTGCATCGAGCACAAGAAATACAGCCGCAACGCTCTGCTCTTCAACCTGGGCTTTGTGTGTGATGCCCAGACCAAAACCTGTGCCTTGGAGCCCATTGTCAAAAAGCTGTCCGGATACCTGACTACGCTGGAGCTGGAGAGCAGCTTCATCTCCAATGAGGAGAGCAAGCAGAAGCTGGTTCCCATCATGTCCACCCTGCTGGAGGAGCTCAATGCCAAGGGCTCATGCACGCTGCCCATTGATGAGTCCAACACCATCCACCTGAAACTGATAGAGCAGCGGAAGGATCCGCTGATCGTGCAGGAGTACGACGTGCCCGTCTTCACACAGTGCAAGGACCAGTTCATCAAGTCCCAGTGGGACCTCACCACCCAGCAGATCCTGCCCTACATCGATGGCTTCCGTCACATTCAGAAGATCTCTGCAGAAGCTGACGTGGAGCTCAATCTTGTGCGGATCGCTGTGCAGAACTTACTGTATTATGAAGTTGTGACCTTGGTCTCAATATTTCAGTACTCCAATGTCTACTGCACCACCCCCAAGGTCCAAAACCTGATGGATGACAAATCGATGCAGGAGGAGTGTCTGCTGTACGTCACCAAGTCAGGCCAGAAGAGGGCCAGCCTGAGGGACGTGTTTCAGCTATACTGTGGCCTGAGTCCGGGGACGACCGTGCGAGACCTCTGCTCCCGATACGCACAGCAGCTGCAGAGAGTGGACGAGAGGAGGCTGATCCAGTTCGGACTGGTCAAGAGGCTGATCCGCCGGCTGCAGAAGTACCCAGTGAAGGCCATTCGGGACGAGAGGAGACGCCCGCCGCGCCTCTACACCGGCTGCCATAGCTACGACGAAATCTGCTGCAAAACAGGGATGAGCTACAGAGAGCTGGATGAACAACTGGAGAATGACCCCAATATCATCGTGTGCTGGAAGTGAAGCACAGGGGTAGTGCAGAATTGAGCTTgtgaggacagagagagacggagggcAGACATGACATCACCAACAGCTGTCCGACTGAGGGCACAAGGGCCAGACATGGCGTCACCACCAGCTGTCACGTGTCCCACAACGCAGCTGGAATGGCTGAAGTCTGAAGaatgacagtttttgtttttgtttggccCGAAAACAGGGCCCGCCTGATACATACACAATGATTGAACAGTCTTGGATCAAATGTGGCCTAGAAATGCATTTGAGATGCATCTTGCATGAAAGTTGCACTGAAATGGTTGACTTACTGTAACcaggttttatattattattattattattgtaattatgtgACTTTTGTATGACAAAGAACAGAATAGTCTATTGTACAGTAAAATGCCAGGCGAATACTAAAAGGTCTATTGTATATTGATTGCTGTcacatgaattatttaaatagtgtgCTTTGTGGACTGTGTTGCCTTAattcataatgaaataaacttgctgttaaatccaaaataaaaataaagtagcaGAAAAGCTTTCTAAGTGTGGATAGGAATGGGAGGCAAGAACTGCTGTGGAATAATACTGGCAGTGCAGACTGGGAAGAATAAGCCAAACATGGAAGAAAGACCTGAAACGGCTCATTGAACATGATCTGGAGGATGTACATGCGCCTGCAGTATAGATGGTGTTTAGACAATCATGTTAGTAACCTTACAGTAACCCTATTTCCAAAGCTATCTGCTACTaacataagaataataaaagtCTTTCTTTTTGTTACCAACAACTGTAATTTATAATATTGATGTGTTAAATTGTTGAATGTAGTGATGTTAAGATCGCTAATTCTCTTTATGTTTTCAGTCCGTTTTGCTCTGTCTCCTAGAGTCCGGATTTAACAGATACTGTTGGTCTCCAGAAATGTCCATCG

Function

symbol description
nprl2 Predicted to be involved in several processes, including cellular response to starvation; negative regulation of TOR signaling; and regulation of autophagosome assembly. Predicted to be part of GATOR1 complex. Human ortholog(s) of this gene implicated in focal epilepsy. Orthologous to human NPRL2 (NPR2 like, GATOR1 complex subunit).

NR:

description
PREDICTED: nitrogen permease regulator 2-like protein

GO: NA

KEGG:

id description
K20405 NPRL2; nitrogen permease regulator 2-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017293 True 2424 mRNA 0.47 11 52912823 52917944

Neighbor

gene id symbol gene type direction distance location
AMCG00017294 NA coding downstream 180 52904340 ~ 52912643 (-)
AMCG00017296 NA coding downstream 12698 52884475 ~ 52900125 (-)
AMCG00017295 NA coding downstream 31810 52868327 ~ 52881013 (-)
AMCG00017281 NA coding downstream 59241 52844864 ~ 52853582 (-)
AMCG00017285 NA coding downstream 72179 52838503 ~ 52840644 (-)
AMCG00017291 tmem115 coding upstream 6879 52924823 ~ 52929839 (-)
AMCG00017298 NA coding upstream 364521 53282465 ~ 53286478 (-)
AMCG00017302 LOC107696462 coding upstream 421562 53339506 ~ 53343302 (-)
AMCG00017309 NA coding upstream 474764 53392708 ~ 53396408 (-)
AMCG00017310 NA coding upstream 478676 53396620 ~ 53396829 (-)
G19604 NA non-coding downstream 143408 52768902 ~ 52769415 (-)
G19551 NA non-coding downstream 221637 52679953 ~ 52691186 (-)
G19548 NA non-coding downstream 247641 52649008 ~ 52665182 (-)
G19516 NA non-coding downstream 364773 52547737 ~ 52548050 (-)
G19330 NA non-coding downstream 1474730 51437880 ~ 51438093 (-)
G19663 NA non-coding upstream 91934 53009878 ~ 53010218 (-)
G19687 NA non-coding upstream 320262 53238206 ~ 53238409 (-)
G19741 NA non-coding upstream 500241 53418185 ~ 53419077 (-)
G19873 NA non-coding upstream 936039 53853983 ~ 53854628 (-)
G19875 NA non-coding upstream 946966 53864910 ~ 53868777 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other downstream 46388 52858340 ~ 52866435 (-)
AMCG00017251 actr8 other downstream 1052556 51846596 ~ 51860267 (-)
G19335 NA other downstream 1463037 51445587 ~ 51449786 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other downstream 1477584 51430687 ~ 51435239 (-)
AMCG00017232 NA other downstream 1700450 51184231 ~ 51212373 (-)
AMCG00017299 NA other upstream 276889 53194833 ~ 53215336 (-)
G19730 NA other upstream 465396 53383340 ~ 53387709 (-)
AMCG00017313 NA other upstream 534174 53452118 ~ 53531131 (-)
G19808 NA other upstream 758139 53676083 ~ 53728883 (-)
G19824 NA other upstream 845054 53762998 ~ 53764376 (-)

Expression


Co-expression Network